RNA id: XM_021613808.2


Basic Information

Item Value
RNA id XM_021613808.2
length 3787
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110530599
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74822494 ~ 74843597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTAGTTTCCAGCAAAGGCCTCGAGAGGGACTCTCAAACTACCACATCTGTAGCTGTGTGAGAGAGGAATCAACATATCACAAGGACAAGTTTGGGGGAGATGCAAAGAACTAGATAAAACGTTGAGTACTGCGGACAAAGATAAACTAGTAGGTCGATTATAGTTAGAGTGGAAATTGAGCGTTAAAACGTTGGGATGCCAAATCATTGATGCAACCCGTCGCACCTCTTTCTTTAATTAAGTTAATCTTTAGAAGCAAGCTACGTTGAATATGTATATTTTCGACATAGGATGCAAGTGATAATAATATTTTTGACACCTTATTTTGCATTTGGAAGCATTTTTCCTATATGTGTAGTCTAGTAGGCTCTTGAAATTTGTTGACAAATACCTACTTGAAGAATCAGGCAAAAGTCATAGAGGAACAGGGGCTTTTTGGACGGGTGTAGTGAAATGGCACTCTGGATAGAGGCGTTTGCCCAACTGCTGTTTCTCGTGTTGGCATGGGACCCGAGCGCACAAGGAGCGGCACCACAAGATATAAAACACGAGGTGTGGTTGCAGCAATATGGCTACCTGCCGCCAGGTGACCTGCGGACACATGCTTCCCGCTCCCCTTACTCCATCACCACGGCCATCACAGCCATGCAGAGATTCTACGGCCTGACCATCACCGGCTCTATCGACAATAACACTTTAGAGGCGATGAAGCGGCCGCGCTGTGGAGTTCCAGACAAGTTTGGCACTGTGCTGAAGAGCAACCTAAGAAAGAAGCGCTATGCTATCCAGGGCCTGAAATGGGACAAGACCGATCTCACCTATTGtATACAGAACTACACCCCTAAGGTGGGGGAATATGAGACCAATGAGGCTATCAGGAAGGCCTTCAAGGTGTGGGAAAATGTGACCCCTCTACGCTTCAGGGAGATCCCCTACAGTCACATACGGGACAGGGTGGTGGACATGGCAGACATCATGCTCTTCTTCGGTGAGGGTTTCCATGGTGATGCCAGTCCCTTCGATGGCGAGGGGGGCTTCTTGGCACACGCCTACTTCCCCGGTAACGGCATAGGGGGAGACACTCACTTTGACTCTGCAGAGCCCTGGACGGTCGGCAACAGTGATCTGTCAGGCAATGATGTGTTCCTGGTGTCGGTACATGAGCTGGGTCATGCTCTTGGCCTGGAGCACTCCAACGACCCCTCTGCCATCATGGCTCCATTCTACCAGTGGATGGACACCGAGAACTTCCAGCTGCCTGAAGATGACCTCAGGGGAATACAGCAAATCTATGGTGGTAGATCAGGTGGTGGCCCTCGCCCTCCTCCACCTAACCCACGCTCCCCTAACCACCCACCCAAACCCACTCACACCCCATACAACCCTGGCTTTGGTCCTGACATCTGTGAGGGACACTTTGACACCATCGCCATCCTCCGAGGAGAAATGTTTGTGTTCAAGgatAAGTGGTTCTGGAGAGTCCGTAACAACGCGGTTCTGGATGGGTACCCAATGCCAATAGGCCATTTCTGGAGGGGCCTGCCGTCAAACATCAATGCTGCTTATGAAAGGGATGATGGCAATTTTGTATTTTTCAAAGGAGATAGGCACTGGGTTTTCAAGGAGTCTCTTCTGGAGGATGGCTACCCCAAGCCTCTGAAGGAGATTGGAAGTGGTCTACCCAAAGACAAAATAGACGCTGCTCTCTTCTACACCCCCACCGGCAAGACATACTTCTTCAGAGGACACAAGTACTATCGGTACAATGAGGACTCACGCTCTGTGGACCCTGAATACCCCAAACCCATCAGTGTGTGGCAGGGCGTCCCAGACAATATTAAAGCTGGCATCATGAGCAGAGACCAAGGACACACCTACTTCTACAAAGCCAATAAGTATTGGAAGTTCAACAACCAGAAGCTTCGTGTTGAGCCTGGATACCCCAAGTCTGCTCTTAAGGACTGGATGGGCTGTCCAGAGGAGGACCCCAAGACcgacggagggagagggggtggaggacaAGACCGGGAAGACAGAAAGGAGGATAGAGACGAGACGGAGGTGATCATCAtcgaggaggagggaggatctGGCGGAGGGGCGGGCGTGGTGGCGGCGGTGGTGGTTCCCCTCATGCTGCTGGCGTGTGTGATCCTCACTCTGGGGGCACTGCTGTTCTTCCGCAGGTACGGCACCCCACGCCGTCTCCTCTACTGTCAACGCTCACTACTGGACAAggtgtagaggggaggagagggagagagaaggaacgaGAGGAGGTTGAAGAGTTGAGAGGGACTGTATAGGAGAGAAAAGAGCAAACAGAGGGAAATGCAAGTGGAGATGAGGGAGAAAAATTTGAGAACTAAAGTCAAAGGGATCTGTAGACTGTGAGCGAAGGTTAGCCAGAGCAAGATATATTTGTTAGCTGTAGCTTAGATATTCCTTACCGGGGCCAACTTAAATATGGAATAGATTCCTTTTGCTCTTACACTCCCACTCTATTCCTctatttctcccccctcttctgtTCTCTCATTGTGGTTGTTGACGCCAGCTCATCGCTGTTTGTTTAGCCTTTTTAAATTTTGTTTTTCAGTTGCTGTTGTCAGTGTTTGTGTCCTGGTAAATTTCAGCTTTATTTGAACATAATTATGTGCAGtgcctccatccatccattccagCACCTATTGTGTTAAAGAATACAACCAACGTCATGTGATGTTCTGCTCCATGTTAGTAGAGGATGCTAGATTCTGTCAAAGCCATTCACCTATTAAGTGTTGCCTCATATACAGTATCTCAGTTATATCACATGAACTATGAacggtctggagagagaggggataaacaCTGagtttaccaaacattaggaacaccttcctaatattgagttgcaccctaccccctttgccctcagaacagactcaattcgtcggggaatagactacaaggtgtcgaaagcgttccacagggatgctggcccatgttgactctacatggtgttgaaagtgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgccaatTTGTCTGGATGTCATTTGGAtggaggaccattcttgatacacacaggaaactgttgagcattttaaaaaaaacagcattgttgcagttcttgacacaaaccggtgcacctggcacctactatggAGTTGGGGGGCCAGACCCTGGTTTCTACACAATGAGAACACTCTTTACAGCAAATATTGTTTGCTGTGAATTATTAGTATCTTTCATAtgaatcttaaccttgtgacccattctataCACCTGTGATTTGTCATGAACATCCAGAAGGATGGACTTAGTCCTGCTGGTTGGGCTCTCGCTTAATCACCTACGTGGGGCTCGTTGACAAGCTCCATTACTGCAATAATTCAATAATAAAGTTGACGAAATGTAAAAGTCTCTCCTTCTGATTAGAATAATTCCACGACAGTCCTTAATATTCTTTAATGTCATGCAGTGTTTTaatgattattattatgattattattattatcaatgatgttgtcattattattatgtCTAGTACTATTGTTTTTTGTTCTCCATGTATAGAATGTGTTTGTGTACATTGTCATTAAATGTCCTGCTGGACAGGGAACTACGTTTTGAAAGTGGCCTTAAATGTATATTTGATTTGAGGGAAAGGGAATGGGATGGGGATATTATTTTGTGAAACTTGATTGTTTTTCCATCTCAATGCAATAAATAGAAGATATGAAAATGACTCCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846817 lncRNA upstream 9056 74812368 ~ 74813438 (+) True LOC110530598
TU846787 lncRNA upstream 29678 74792558 ~ 74792816 (+) True G745977
TU846786 lncRNA upstream 30027 74792115 ~ 74792467 (+) True G745976
TU846770 lncRNA upstream 39821 74780777 ~ 74782673 (+) True G745967
TU846742 lncRNA upstream 68520 74753288 ~ 74753974 (+) True G745950
TU846838 lncRNA downstream 9261 74852858 ~ 74853979 (+) True G746012
TU846840 lncRNA downstream 11112 74854709 ~ 74854939 (+) True G746014
TU846867 lncRNA downstream 95116 74938713 ~ 74938952 (+) True G746041
TU846871 lncRNA downstream 99285 74942882 ~ 74943082 (+) True G746045
TU846874 lncRNA downstream 101311 74944908 ~ 74945125 (+) True G746048
XM_021613807.2 mRNA upstream 9925 74804701 ~ 74812569 (+) False LOC110530598
XM_021614268.1 mRNA upstream 26209 74795416 ~ 74796285 (+) True LOC110530985
XM_021613790.2 mRNA upstream 105083 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA upstream 105083 74713094 ~ 74717411 (+) True LOC110530590
XM_036986228.1 mRNA upstream 109691 74697349 ~ 74712803 (+) True LOC110530591
XM_021613816.2 mRNA downstream 45608 74889205 ~ 74892297 (+) False c8h14orf119
XM_021613814.2 mRNA downstream 46551 74890148 ~ 74892644 (+) True c8h14orf119
XM_021613819.2 mRNA downstream 114593 74958190 ~ 74964449 (+) False homeza
XM_021613817.2 mRNA downstream 115642 74959239 ~ 74964449 (+) False homeza
XM_021613818.2 mRNA downstream 115644 74959241 ~ 74964449 (+) False homeza
TU846223 other upstream 1101844 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 1227256 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1571998 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1954112 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1957791 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 109088 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 171047 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 179567 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 188333 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 484175 75327772 ~ 75328195 (+) True G746936

Expression Profile