RNA id: XM_021613845.2


Basic Information

Item Value
RNA id XM_021613845.2
length 2016
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110530631
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75641254 ~ 75645294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCAGGTGTTGTTGCCATGACAACCCATATTGTGAGTTTTTTTTATGCtcttgagacagacagacagacagacggcaaCAGCGAAAAAAAAAGATTGGTCTAACCTTCTGCCAGACTTCTAGCTAAATAAGCTCCAAACTGAAAGTCTGATATGGAAGAGACTGCTACGACGGAGGAAGCCGTGGAGTTAAAAGCCTCTAGCGAGGCCATCGCCTTTCTGTCCAGCATACggGCTGCGGAGATGCAGCGGTGTCTGTTTGAAGACTCTCTGGTGACAGTGTCCgaggggggcagagagctggGAGAGTTTAAGGTGACTGTGGAGAGGACCATTTGCAGGGAGCAGCCTTGCCTGCTGCTGCATGCACACAGCCATGGAGCTATTGACAACACTCCCTGTGGTACAGCCATCACTGCCTACCTTTCTTTGAACCTGGAGACCCTGGAGCAAAACCACCACGAGTACGTCAAGCTTCAGGACCACCGATTGGACAGGAAGTGTCACATGGTCCAGCATGATGGACAGCTGGTGGTGAACAAAATCACCACtgtgggagaggAGATTAGGAGGCAGACCTTGTCGTACCCTCTGTCCTCTGTGAAGGGGTTAGTGTCCGAGGGCTCTAACCTGCTGCTGCTGAGGGTATTCGCTCTGAGGAAGAACGTCCCGGAAAACATGACCTTCCTCTCCTTCGACCAGGACACACACATATCCACCTCCACATATGAGCTGGGGTGCAGGCAGCAGACGGCgggagaggaggtggtggaggtgtttGGGGTGGAGAGGACGGTCAACTCGGTGGAGGACATCCCAGCCATGTGGCACTGCTACTTCCTGTCTGACGGGCATCTGGCTAGCCGAGTGCAGGTGGGCTCTCCTGTGACCATGAGGCTCTTGCTACTCCCgctccaaacacacacagAGGTGAGAGATGATAAGCCTGTGTTTGAGAAGAGGTCTCTGGTCTGGGAGGAGGACATGCAGATGCACTCCATGTTCCTGGACAGAAAGgagGAGTTGAAGGCGGAGCATGCCTCGTACCTGCGGCAGCACCCGGAGCTCCGCACTATGATGGCTGACTTCCTGCAGTTTTTGTTACTAAGGAAACCGAGCGACGTATTTGTGTTTGCCCGCGAATACTTCTCCCCATTTGCCTCCCTCCAACCTCCGGGGAGCACCTTCAACACCTCCTCACCCTGAGGATGCGTCTCAACAGTATAAATAGCTTCCTCTCCACTGATCTGAGACACGTATGGGATAGGTGAAAGCACTGTGATGTAGGCTTGCCGTGCCTACTAGAGATTGGAATTAACTTGTCCAATTATTTTATGTCAGTTCAGATGGAGGAAAGGGAATGAAGAGAAGAAGCCTCTTTTGAGATTCAGCCCAGTTCTCTTTAATAGGTTCTGTCTTTcatctttttttcatttttttgcccctttttctccccaattggtagttacagtcttgtcccatcactgcaacacctgtacagactcgggagaggcgaatgtcgagagccatgtgtcctccgaaacacaaccccgcaaagccgtactgcttcttgacacaatgcccgcttaacctggaagccagccgcaccaatgtgtcggaggaaaccatgtacacctggcgaccgtgtcaacATACATGCGCccgacccgccacaggagtcactaaaGCGTGATGGTGACGCGATTGTGCACATCTTCacgggtctcccggtcgcagccaggaatcgaaccaggatctgtagtgacacagctagcactgcaatgcaaagccttagaccgctgggagGCCCTCCGTCTTTCATCTCTTGAGGGACAACTGAACTATTTATTGGTGGTTTTTGCAATAAGGCAGAGCAGTGGTTATGAAGGAAATAAGATGAGGAAAGGGAGCACTAAATTATTGGGACATAGATAAGGAATTCCAGGAGCTCattttcagctgtgtgtgtgttgtcattttAAATTTCAATAAAGCGTAATGTTTTATTTAAGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848101 lncRNA upstream 34021 75605375 ~ 75607233 (+) True G747065
TU848068 lncRNA upstream 97768 75542967 ~ 75543486 (+) True G747038
TU848064 lncRNA upstream 98160 75539255 ~ 75543094 (+) False G747035
TU848065 lncRNA upstream 98347 75539255 ~ 75542907 (+) True G747035
TU848016 lncRNA upstream 171143 75469911 ~ 75470111 (+) True G746995
TU848146 lncRNA downstream 25498 75670792 ~ 75671187 (+) True G747098
TU848166 lncRNA downstream 43071 75688365 ~ 75691854 (+) False G747118
TU848167 lncRNA downstream 43071 75688365 ~ 75697197 (+) True G747118
TU848615 lncRNA downstream 124346 75769640 ~ 75770618 (+) True G747508
TU848623 lncRNA downstream 136983 75782277 ~ 75782622 (+) True G747516
XM_021613842.2 mRNA upstream 22994 75613940 ~ 75618260 (+) True LOC110530629
XM_036986266.1 mRNA upstream 31623 75595690 ~ 75609631 (+) True LOC110530628
XM_021613837.2 mRNA upstream 75222 75544924 ~ 75566032 (+) False tgm1l1
XM_021613836.2 mRNA upstream 75222 75544926 ~ 75566032 (+) True tgm1l1
XM_021613835.2 mRNA upstream 118602 75490835 ~ 75522652 (+) True LOC110530623
trnae-cuc-7 mRNA downstream 16155 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613846.2 mRNA downstream 21020 75666314 ~ 75672821 (+) True LOC110530632
XM_021613848.2 mRNA downstream 149963 75795257 ~ 75799474 (+) True LOC110530636
LOC110530988 mRNA downstream 155979 75801273 ~ 75826734 (+) True LOC110530988
XM_036986274.1 mRNA downstream 313714 75959008 ~ 75997054 (+) False LOC110530640
TU847964 other upstream 258126 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 284097 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 313059 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 607358 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 470399 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 594656 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 806276 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 1061436 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1505369 77150663 ~ 77177349 (+) True G748905

Expression Profile