RNA id: XM_036986273.1


Basic Information

Item Value
RNA id XM_036986273.1
length 4666
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC110530640
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75959008 ~ 75997054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCGTACATTATCTAATATGGTTAATGTGCAGTTGTGGGTCTAGTTATGAAACCAATCAAATAGGTATTTTGATTAGTTGGCACAAGCACCAAAATTGGACGCAATAGCCATTGTTGGCACCATCTTTGTGAGAAATCATTAAATATTTACCCCTGCAGGTGTCAGTATGGCCATGCAGTTCAGTGGTCTACGGGCGTAGTGTGGACTGACCCCATCTACTAGCTACATCCAGGAAGAAAGATAACCGTACAACCAGAGTTCGATACAGCCAGCCAAGCCAAGCAATCAATCCAGGCAGCACAAGGAAATTTGTGGAAGCGACGTTTGGAGCAGACTTCAATCTCAATGGAGTAACATCTATATTAAAATAGATAGGATGCTATTTGAAAATGTTCAATAGAAAGAAAAAGGAATTAAATAAAACTTCAGTTTCAAAGAAGAATCTTGTCGGAAACTTTGGGTCACATAACTCATCACTATCTGTCCTCCaggaacaacccactagagatgGTGGCTTGGATGTCCCCCCCCCTTTCCCTGCATCCCTCCAGGACCCCCAGGCTCCTCCCTGCCCCACTACCACCTGTCTGCTGCACCCCAGGCTGGCCACCGCCACCAGCCCTCCCCCTGTCCTTGGAGCCTGCCTTAGACGGCCCACAGCCCTGAGTCGACATGCCAGTGCGGCTGGCTTCCCCCTACAGGCGGCTGGAGCCTGGGCCTTCAGTAAGACACAGGGGAAAGGAGCGAGCCTTGCCTCCAGCCCCACCACAGAGGCCTCGGAGGTGGGCATCGAAGTGGAGGACATCCCCTCTTTGCTCCGGGATGTGGCTTGCTTCGCTGAGGCTGTAGAGAAACTGAAAGAAATGGTGCTGGGGGAAGacaggcagatagatAACCTCTCAGACAGGCAGCTGGACCGTCGTGACCTGGCCCAGGAGTGTTTGGGAGAGGTGTTGCGTGTGTTGAGGCAGGTGATCGGTGCCTACCCCCTCCTCAACACTGTAGAGACCCTCACTGCTGCTGGAACACTCATCTccaaggtcaaagGGTTTAGTTACAAGGACAGCAGTGACATGGGTAAGCAGGACTTTGAGAAAGCCATTGAGACCATGGCTGTGGCTTTCAGTAgcagtGTGTCAGAACTTCTGATGGGAGAAGTGGACAGCAGCACCCTCCTGTCTCTACCGctaacagagaggagcaggtctatGGAGAACCTGTATGGCTTAGACTCAGCCCAGGCCAAAGACTGTCAAGGGAGGAGTGACCAGCAGGACTGCTGCAtgctgagTGGAGAGCAGGTTGACCTCCTACTGCAGTgcagtgagggaggagtggaCTCCGCTCTCTCCTATGCCAAGGCTGTGTCCAGATATCTGAAGGACGTTATCAGCTATGTGGAGAAAAGGACTGCTCTGGAGATGGAGTTTGCCAAGGGTCTGCAGAGGCTGTGTCAGTCCTGTAAGCAGAGCATTGCACAGccccAGATGCCATTCTTCTCCATCTACTCTCTGGCTCTGGAGCAGGACTTAGAGCAGAGTGTGGGTGTGCAGCAAACCACTGGCTCCATACACACTGTTCTACAGCCTCTGATGCAGTGTAAACAGGAGCATGAGAGGAGACGCAGAGAGCTCGGAGAGCAGTGGCAGAGGGCCCAGAGGAAACTGACTGATGCTGAGAGTGGCATGCGTAAAACTCGAGGCTCATACATGATTCGCTGTGAGGAGTATGACAAGGCCAGGGGTCGGGCAGAGGAGGAGCTACAAGGGGGAGCAGGCGGGCTTAAAGCTCTGGACCGGAAGAAGCGATTGGAGGAGGAGGCCAGGACCAAGGCTGAAGAGGCAGAGGCTGTGTATCGTGCATGTATATCCGAGGCGGAGGCGCGGCACCAGGAGAGAGAGCAGACTAAGGGCAGCACTCTCAGACAGATCCATGATGTCATCAGACACACAGACCACACCCTTAGATCTTGCACGGTGTCGTACTATCAGCTGCTGCAcatgcagacagcagtgctgccAGTCCACTACCAGACTCTGTGTGAGAGCACCAAGCTCTACGAGCCGGGACAACAGTACGCCGCTCACGCAAGACATCTACACAAGAGCCCAGAGGACGCCAGACATCTCTACACGAGCACAGAGGATGCCAGACATCTGTCAAACCCAGAGCCTGCAGCTCACTACCACTTCGAGCCCTACTCATCAAACCATCTGTCTGGACACACCCGCCACAACAGCTCTAATACGGATGTACCAATCAGCACGGAGACCACACCTCCCACGGATTCACCAATCAGCACGGAGACCACACCTCCCACGGATTCACCAATCAGCACGGAGACCATGCCTACCACAGACGAGGATGGTGGTGCTGAGGATGGAGTCACACAGAGATGTGGGCACGTACCTAAAGCCAGTGAAGAAGAACATGATGGAAACGTCACCTCGTTTGAACAGGGGACAGAGCCAGAGATCGCCGTTCCCACTGGTCCCTTCCGGAATGTGGGAATGTCCAAGGCAGCAAAGACCCACAGACTCCGCAAGCTCCGCACACCTGCCAAATGCAGAGAGTGTAACAGCTATGTGTACTTCCAGGGTGCAGAGTGTGaggagTGTTATCTGGCATGCCATAGGCGTTGCTTGGAGAACCTGGCTATCCAGTGTGGCCATAAGAAGCTACAAGGTCGCCTGTCACTGTTTGGCAGGGACTTCACGCAGGGGCTGGGAGACCCCGATGGTGTGCCTCTGGTCATCAGGAAGTGCATCACAGAGATAGAGAGCAGGGCTCTTAGGATGAAGggtatcTATCGTGTGAATGGGGTGAAGACTCGTGTGGAGAAGCTGTGCCAGGCCTTTGAGAATGGGAAAGAGCTGGTGGAACTGTCCCAAGCCTTTCCTCATGATATCAGCAACATGCTCAAACTTTACCTCAGACAGCTGCCAGAGCCTATCTTGCCTTTCCATCTCTATCAGTCTCTGATGGGGCTGGCCAAGGAAAGCCTGCGTTCTGCGTCTCCTAGCCCAGATGGAGGTGAGGTGGCTGGGACAGCAGTCCTGGCAGACCTGGGTGCTGAGACTCCCCTGGAGGTCCTGACTCTGGTCCACAGCCTGAGGGAGCTAATGCTAACGGAGCTGCCGCAGGCTAATACAGCCACACTGCGCTATATTGCACAGCATCTGCGCAGggtgtgtgagtgtgagcaGGAGAACAAGATGAGTCCCAGTAACCTGGGCATTGTGTTTGGCCCCACCCTGATGCGTCCCCGTCCCTCCGGGGCCACCGTGGCCCTGTCCTCCCTGGTAGACTACCCCCACCAGGCCCGCATCGTAGAGACTCTCATAGTCTTCTACAGCACCCTCTTCCATGACAGCTCCTACGACACCCCAGTTTCCCCCTTAGCCCTAAGCCAGGTGAGTGAGCGACTGTGGGTGTAGGGTGTCATAGTGAAACAGTGTGCTGGTTCTGGTCTAGAAACAAGTAATGTGAGGAAAATACAATTATGGGCCTCGAGAGAGTGGAAGAGCAGTAGCAACCAAACAAATAGAAGAGAAGGAcgcatataaaaatatatatatacattttttttatttaacaaggcaagtcagttaagaacaaattcttatttacaatgacggcctacaccggccaaacccggataacgctgggccaattgtgcaccgccctatacagactggattcgaaccagtgacgcctccagcactgagatgcagtgccttagaccactgcaccacttgggcATACACACTTGCACACTATTGTATCACATTCAACCATTTCTGCTGTGTGTTTCTCCTAGGacggtggaggggaggaggggagagactgtgggggtgggggaggagtCCAGGGGAGAGACtgtgggggtgggggaggagtCCAGGGGAGAGACGAGGGAAACAAGACAGACTTAAAACACGACGGGGGTGAGACGCCAGATAACCACACTGAGAGACCAGTGGAATCAGACTGAGGAGGAACCCTCAGCACCCACTGACCCTCTCTGGACCTGAACTCTTCAGACCAGTGGAATCAGACTGAGGAGGAACCCTCAGCACCCACTGACCCTCTCTGGACCTGAACTCTTCAGCAAAGAACTTCTGGGAAAAATGGAAATGTTTTTCAAATGAAAAAGTACTTTAGTGAATTCTACAAATTGGAATTCATTTGGGAAATTGCAGTTGAAATGAAAGTGGTTCCAACTTACTGTTTTAATGCGTTGACTACTGATGAAAAAGTACACTGACTGGATAGCAGAATATCATATTGCTGTTGTGTGAACGTGTTCATTTCATTGCATGACTTGAGGTATGATTTTCTAAACCAGTTTTGCCAAAATGCTGCACAAAGCTATTTTTATTGTTTTAATTACCTGGCGAGATATCAGGAAGGAATGTGAGATTCAGTGTTTTTGTGCCTGCAATTTCCTCTTTTTGTATTCTCTCTGTATACCCCTTGTATGGTGTATTCATATGGTATGTCTATAGTCCAGCCTACCATCTGCCTGTGTACTCACACCACTACTTCAGCACTGCTGCTGGTTGGTATGCTAGTCATTGAGAGATGACATGTTTATATTGTTACAGTTCTAACATGATTTGTTGTATATCCTTGGTGACATAAAATTCAAATGTCAAGCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848736 lncRNA upstream 6182 75975243 ~ 75975468 (+) True G747618
TU848715 lncRNA upstream 25525 75955841 ~ 75956125 (+) True G747598
TU848714 lncRNA upstream 26173 75955193 ~ 75955477 (+) True G747597
TU848696 lncRNA upstream 43503 75937850 ~ 75938147 (+) True G747580
TU848684 lncRNA upstream 49983 75930097 ~ 75931667 (+) True G747573
TU848796 lncRNA downstream 103035 76100089 ~ 76100889 (+) True G747671
TU848797 lncRNA downstream 108806 76105860 ~ 76106084 (+) True G747672
TU848800 lncRNA downstream 114084 76111138 ~ 76111373 (+) True G747675
TU848810 lncRNA downstream 132582 76129636 ~ 76129889 (+) True G747685
TU848745 lncRNA downstream 145766 76142820 ~ 76144815 (+) True G747627
LOC110530988 mRNA upstream 154916 75801273 ~ 75826734 (+) True LOC110530988
XM_021613848.2 mRNA upstream 182176 75795257 ~ 75799474 (+) True LOC110530636
XM_021613846.2 mRNA upstream 308829 75666314 ~ 75672821 (+) True LOC110530632
trnae-cuc-7 mRNA upstream 320130 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613845.2 mRNA upstream 336356 75641254 ~ 75645294 (+) True LOC110530631
XM_021613860.2 mRNA downstream 10217 76007271 ~ 76044709 (+) True LOC110530643
XR_002474565.2 mRNA downstream 64815 76061869 ~ 76071906 (+) True LOC110530645
XM_036986279.1 mRNA downstream 76651 76073705 ~ 76101494 (+) False LOC110530646
XM_036986280.1 mRNA downstream 76659 76073713 ~ 76101494 (+) False LOC110530646
XM_036986281.1 mRNA downstream 82744 76079798 ~ 76101494 (+) True LOC110530646
TU847964 other upstream 598522 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 624493 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 653455 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 947754 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 118639 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 242896 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 454516 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 709676 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1153609 77150663 ~ 77177349 (+) True G748905

Expression Profile