RNA id: XM_021613860.2


Basic Information

Item Value
RNA id XM_021613860.2
length 7140
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110530643
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76007271 ~ 76044709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAACAATTCTTTTAAACGATTAGCTACATAAACAGTTTCATAATTTAATATGTAATTAAATAGCTCATATTTCAAATTAAAATATTGTATATTTCAAATTTGAATCGTTGAAGATTAGGTCATCGCAGTAAAAACAGGCATTCATTTCTTACTGTGCATGCACCGTCGGATGCATTGAGCTATGGGTCTAATGTCGTAAACAAGATTTTCACGGACAGATTTGTCAAGAGAGCCACTGTTTTTGGTCTAGCTAATGTTTGCAAAACAACAAAATGCAAACGCTCCGGGAGGAAAAGGgtcctcctcttcctctgtcgtCTATGCGTCTTTTTATTCCTCCACTGCGCCTGGTGTGTGCAGCTCTGTGGCAGGTTGTAGAGCGGAGAGACATCATGGACTATGGGCTGCTGGAGGAGTTTGCCACCAGTGTGTTGGAAATAGTCCCTGAACTGATGACTTACAGAGAGAGGGTCCAACTCCTCATGGGACTGAGAGCACGGCTGGTTCTGGAGTTGTGTCGCTGTGATGATGAGCTGTGTCGCCCTGATACTGTCCAGCCACACCTGAACAGGATAAGGAGCTGTGTCTCCAATCAGAAGGGAGAGGTTTCAGATCCAAAGGTGGAAGCATCAGAGGCCAGCTTCATGAAGCTGATTGAAACCCTACTGGAGCAGCCAGAGGAGAGGGAACTCTTCTTTCAGAATGTTTTTCCAGAGGAGTATGGCCCCAAGTATGACTCAACACTGCAGATTCTTGTGTGGGAGTTCCTGTCCAGGCTGGAGAAACTGATTCCTGCTCCAAACCTTAAGCAGACTGCGTCTTGGCTCAGCCTTGCCCCTGCTCTCTTAGAGGAGTGTGTGCAGTCTGTGGCTCACCCTGAGCCATTACAGGCACTCCTCCATCACCATAAAAATGGACATCACTTAGACACCAATGCTCTAAGGTCCACTGGTGGTGACTACATCCTCTCTTCACTGTCTTTCCCTTCCTCTGTGAAGGAAGAAATTGCCTCTTGCCAAGCAGGCCCAGAGAGACAGTCCTATCCCACCATAAAGGGATATCAAACCCCTTTCCCATCTGATGAACCAGAGATGAGCTGGGACTGCAGAATGGCAGATCGTAAGGTCTGGACTGTAAAGCCACCAGCCCGTTCTGCTTCTGTGGAGGTCGAGGTCAAGACTATAGAGGACGCCACTGAGATAACCGTTAAACGCAAGACAATCAACAAAGAGTTGATAAAAGAAACCAGGAGAGATAAAGCTGTTCTCTGCCCTCAGACTCGCAGTGGGCTGAAAACCAGCCGCTTGACTGCTTCCTGTCTGCGCCGTCATCCCGTACTGCGGTTGAACAGGCTTGACATTCGCAATATGCCGTTACCCAAGTCCTTGCTAACACTGATTCTAAGGAGAGGGAGACTGCAGGCTGAGACAAGACGCCCAGGACCGAAAGGAattgacagaaaaaaaaaacGGAGAAGAGGTCGTGGTATTACAAATGAGAAGATTAAATCACACACACTTGATATAAGCGATATGCCGCTACCCAAGTCCCCGCTAACACTGACCCTAAAGAGAGGGGTACTGCTGGATGATCCGACGAGTTCCCAAGTACAGAAAAAAAGaggtagaaaaaaaggagagaaaaTAGGACCTGGTATCACAAGATTAAAGATTGAGAAGATTGGAGCACACACACTTGACATAAGCGATGTGCCATTAGCCAAGCCCTCTCTAAAACTGGTTATAAGGAGAGGGAAACTGCAGGCTGAAGCAACAGGTTCTCAAGGGAAAAAAACAAGGGGCAGAAAGAAAAAATGGAGAAGACGATGTGGTGTCAAAAAGGAGGGTGTGAAAAGAGAGCGGTCACCTGAAACTGAGGAAGAAGCTGAACCATCAGATTATGAACTTTGGACCAGCGTTAATAAAGGGGTCACACTCAATGAAAGGGCCCCTGTCGATGAATCTGGTGGAGTCCATGCTTCTAATTTCCCAACGTCTCATAAGAGGGAGGAGGAACAGCCCATACAGACCTGTCACACAGAGGAGCACAGTGGTCATATGGCCGAAGGGCAGAACAGAGTAGAAGTCTCAGAGATTGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCGCTCACAGAATTCATTCAGAGGAGCACAGTGGTCAGATGACCGAAGGGCAGAACAAAGTAGAAGTCTCAGAGATTGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCGCTCACAGAATTCATTCAGAGGAGCACAGTGGTCAGATGACCGAAGGGCAGAACAAAGTAGAAGTCTCAGAGATTGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCTCTCACAAAATTAATTCAGAGGAGCACAGTGGTCAGATGGCCGAAGGGCAGAACAGGGAAGAACTCTCAGAGATTGTTCCTCAGGACTCACTAACTCCTGAGCCATCCAACACCTCTCACAGAATTCATTCAGAGGAGCACAGTGGTCAGATGGCCAAAGTGCAGAACAGGGAAGAACCCTCAGAGGTGGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCTCTCACAAAATGCATTCAGAGGAGCACAGTGGTCAGATGGCCAAAGGGCAGAACAGGGAAGAACCCTCAGAGGTGGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCTCTCACAAAATGCATTCAGAGGAGCACAGTGGTCAGATGGCCAAAGGGCAGAACAGGGAAGAACCCTCAGAGGTGGTACCTCAGGACTCACCAAGTCCTGAGCCATCCAACACCTCTCACAAAATTCATTCAGAGGAGCACAGTGGTCATATGTTCGAAGAGCAGAACAGAGACGAACTGCCAGAGATGGTTCCTCAGGACTTAAGACCTCCTGAGCCATTCAACACCTCTCACAAAGTTCACTCCGAGGAGCACAGTGGTCGTATGTTCGAAGAGCAGAACAGAGACGAACTTCCAGAGATGGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCGCTCACACAATTCATTCTGAGGAGCACAGTGGTCAGATGGCTGAAGGGCAGAAGAGAGAACTCCCAGAGGTGGTACCTCAGGACTCACTAACTCCTGAGCCATCCAACACCTCTCACAAAATTCATTCCGATGAGCACAGTGGTCAGATGGCCGAAGGGCAGAACGTAGAAAAACCTTTAGAGAGTGTACCTAAGGACTTACTAACTGAGATTGTACTTCAGCACTCGTTAACTTCTGAGCCATCCAACAGCTCGCACAAAAGAAGCCAGCGCGTCAAGGCATGCTCTTTCTGTGGCAAGACTTTCACTGACACACTGGGCTTGACAAGACACATGCGATCTCACATTGAGCAGAGGTCACACCAATGCACCCAATGTGGGCAAGATTATGATTCCAGTGAGGACTTAGAGGAACACCAGAAGAGAAGCTGTGAGGAGAAGATAAAAAAAGAAATTGGTGAGGACAATGGTGGGGAAACTGTCCAGCAAAAAACGCATCTGAAAAGAGACAAAAAACCTGATCTGAAAGCAGACAAAAAACCTGATCTGAAAGCAGACAAAAAACCTGATCTGAAAGGACACAAGAAAGATCGCTCCATAATGTGCCATGTGTGCGGGAAAGTAACTACTCGTATGTTGGGTTTGCGAAGACACCTTCTACTTCACTTCAACAATGGCGCATACAAATGCCCTGTATGTCCAACGACTTTTATAACAAACGCTGATTTGAGATCGCACCTGAGATTGAAAAGATCTTGTAGGGAAAAATGTTCTGATGAAGTAATTAATACCAAGGTCCATCTCCAATCCAACCCTGGTGAGTACAAGTGTCCTTACTGTGGGGACACTTTCCAGCTACCACATGATCTGAAAGGACACACAAAAGACTGTTCCAGAAAGTGCCATGTGTGTGGGAAAACAACTTTGAAGCCGTGCGGCATGCGAAGGCACAtgttaaaacacaacaacaatggCCCCTACAAGTGCCCGGTGTGTCCAAGGACTTTTATATCCCGTACTGATTTGAAGATGCACCTGAAAAAAAATAAGCAATGTAGGGAGAAATGTTCTGATGTCATGGTGAAGGAATTACTGTCATCAGTAGATGGTAGATGTGGGAAAAATGAAACAGGAGTCATGACAAGCTGCCAACAACCAAGCTCCAGCAACACTTCTGGGCCTTCAAAGAATATTGAACAGTTCTTTGAACAGTTCTCTTATGACTTTCAGCAATCCAATAACAGCGCGAGTAGTGATGTGAAGCTGAATAACCTCAATGaaaactacagtaaataccaaCCCATGAAGGATGTTGACTTGAATAGCCTCCATGAAGCCTCCATGGTGACCACTGAAGACTACAGTGATGAGATCAGTCAATACCAACCCATGAAGGACAAAAAGTCTGTGGATGATTCATTGGAAAATGAGATGCCCAATGACAAAGAACCAAACTCAACCATTGGCTTAACAGGGAAGCAGGTGTCCCAGACTGACCCAAAGCCTCTCCAGGATTCTCAACCAGAGATAAGCGGAGAAGTGAAGAACGAGATACAGaGCGGGAAACTGCAGGCTGAGGCCACGGGTTCCCACGGACAGAAAagaagaggcagaaagagaaaacAGAAAAGAGGACGTGGTGTCAAAAATGAGAAGAGCGAAGCAAAGGGTGTGAAAAGAGAGCGGTCACCTGAAACTGAGGAAGATGCCGAACCATCAGATAATAAACGTTGGACCACTGTCATTAAAAGGACCACTGTCTGTGATTCTGGTGGTGTCTCAGAGAGTGTACCTCAGGACTCACTAACTCCTGAGCCATCTCACAAAAGAAGTCAACGAGTCAAAGCATGCTCTTTCTGTCGCAAGACTTTCACTGAAACACTGGGCTTGACAAGACACATGCGATCTCACATTGAACAGAGGTCACACCAATGCACCCTGTGTGGGCAAGACTTTGAATTCAGTGAGGACTTAGAGGAACACCAGAAGAGTAGCTGTGAGAAGAAGAAGAGTGGTGATGAATACTGTGGGGGAACTGTccagaaaaaaaaatatctgaaaaaaAAACCCTGATCTGAAAAGAGACAAAAAGCCTGATCTGAAAGGAGACAAGAAAACTCATCTGAATAGAGCCAAAAAAAATAATCGGAAAAGAGACAAAAAAACTGATCTGAAAGGACACACAAAAGACTGTTCCATAATGTGCCATGTGTGCGGGAAAGTAACTACTCGTATTGTAAGTTTGCAAAGGCACCTTCTACTTCACTTCAACAATGGCGCATACAAGTGCCCTGTGTGTCCAAAGACTTTTATATTAAATTGTGATTTGAGATCACACCTGAGATTGAAAAGATGTTCTGATAAAGTAATTACAACCAGGCTCCACCTCAAATCCAACCCTGGGGATTACAAGTGTCCTTACTGTGGGGACACTTTCCAGCTACCACGTGATCTGAAAGGACACACAAAAGACTGTTCCAGAAAGTGCCATGTGTGTGGGAAAATAAGTTCTCGAAAACTGGAAATGCGAAGGCACAtgttaaaacacaacaacaatggCCCCATCAAGTGCCCGGTGTGTCCAATGACTTTTGTATACCATACTGATTTGAAGAAGCACCTGAAAACAAAAAAACTATGTAGAGAGAAATGTACTGATGTCAAGGTGAAGAACAATGCGGATTTGAAATTGCCCCAAAGATTGAAAAGGTCTTATAGGAAGACATTTTCTGATGATGTAATTACAACCAAGATCCACTTCAAATCCAACTCTGGAGATTACAAGTGTCCCTACTGTGGGGACACTTTCCAGCTACCACGTGATCTGAAAGGACACACAAAAGACTGTTCCAGAAAGTGCAATGTGTGTGGGAAAACAACTTCAACGGCACGCGGCATGCGAAGGCACATGTTAAGACACAACAACAATGGCCCCTACAAGTGCCCGGTGTGTCCAATGACTTTTATATACCATCCTGATTTGAAGAAGCACCTGAAactgaaaaaacattgtagaGCGAAATGTTCTGATGTGATGATGAAAGAAATACTGTCTTCAGGAGGTGGTAGATGTTGGAAAATGTTCAATGAAACAGCAGTCATGACAAACAGCCAACAACCAAGCTCCAGCAACACAGGTGGGCCTTCGAAGAGAATTGAAGAGCTCTCTCATGACTCGCAGCAATCCGATAACGGCATGAGTAGTGATATGAACCTTAATAGCCTTGAAGAAGGTCACAGTGACAAGATCAGTCAATACCAACCCATTAAGGACGTTGACTTAAGTAGCCTCCATGAAGACTTCAGTGATGAGATCAGTCAATACCAACCCATTAAGGACATTGACCAATCCAACCCTGGTGAGTACAATTGTCCTTACTGTTGGGACACTTTCCAGCTCCCAGATGATCTGAAAAGCCACACAAAAGACTGTTCCAGAAAGTGCCATGTGTGTGGGAAAATATCCTCAAAGGCATGTGACATGCGAAGGCACATGTTAAAACATGACAACAATGGCCCCATCAAGTGCCCGGTGTGTCCAAAGACGTTTATATTCCATACCGATTTGAAAACACACCTGAAAACAAAAAAACTTTGTAGGGAGAAATGTTCTGATGTGATGGCAAAGGAATTACTGTCTTCAGTAGATGGTAGATGTAGGAAAAATGTTAATGAAACAGGAGTCATGACAAGTTGCCATCAACCAAGCTCCAGCAACACAGGTGGGCCTTCGAAGGGCGGGCCTGTGTTGGGTTTGAAGAGCTTTGAAGAGTTCTTTGAAGAGCTCTCTAATGACTCCGATATCAGTATGAATAGTGACGTGAACCTGAATAGCCTCGATGAAGACTACAGTCAGGAGATCAGTCAATACCAACCCATTAAGGATGTTGACCTGAATAGCCTCGGTGAAGACTACAGTCAGGAGATCAGTCAATACCAACCCATTAAGGATGTTGACCTGAATAGCCTCGGTGAAGACTACAGTCAAGAGATCAGTCAATACCAACCCATTAAGGATGTTGACCTGAATAGCCTCTATGAAGACTACAGACAGGAGATCAGTCAATACCAACCTATTAAGGACGTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848743 lncRNA upstream 21723 75984381 ~ 75985548 (+) True G747625
TU848736 lncRNA upstream 31803 75975243 ~ 75975468 (+) True G747618
TU848715 lncRNA upstream 51146 75955841 ~ 75956125 (+) True G747598
TU848714 lncRNA upstream 51794 75955193 ~ 75955477 (+) True G747597
TU848696 lncRNA upstream 69124 75937850 ~ 75938147 (+) True G747580
TU848796 lncRNA downstream 55380 76100089 ~ 76100889 (+) True G747671
TU848797 lncRNA downstream 61151 76105860 ~ 76106084 (+) True G747672
TU848800 lncRNA downstream 66429 76111138 ~ 76111373 (+) True G747675
TU848810 lncRNA downstream 84927 76129636 ~ 76129889 (+) True G747685
TU848745 lncRNA downstream 98111 76142820 ~ 76144815 (+) True G747627
XM_036986274.1 mRNA upstream 10217 75959008 ~ 75997054 (+) False LOC110530640
XM_036986272.1 mRNA upstream 10217 75981648 ~ 75997054 (+) False LOC110530640
XM_036986271.1 mRNA upstream 10217 75981649 ~ 75997054 (+) False LOC110530640
XM_036986273.1 mRNA upstream 10217 75981650 ~ 75997054 (+) True LOC110530640
LOC110530988 mRNA upstream 180537 75801273 ~ 75826734 (+) True LOC110530988
XR_002474565.2 mRNA downstream 17160 76061869 ~ 76071906 (+) True LOC110530645
XM_036986279.1 mRNA downstream 28996 76073705 ~ 76101494 (+) False LOC110530646
XM_036986280.1 mRNA downstream 29004 76073713 ~ 76101494 (+) False LOC110530646
XM_036986281.1 mRNA downstream 35089 76079798 ~ 76101494 (+) True LOC110530646
XM_021613864.2 mRNA downstream 165831 76210540 ~ 76211899 (+) False LOC110530649
TU847964 other upstream 624143 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 650114 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 679076 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 973375 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 70984 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 195241 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 406861 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 662021 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1105954 77150663 ~ 77177349 (+) True G748905

Expression Profile