RNA id: XM_036986281.1


Basic Information

Item Value
RNA id XM_036986281.1
length 2747
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110530646
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76073705 ~ 76101494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCGACAGGTCTGAATTTTGGGGAATTTTTGAATGTGTTTTTGGTAGAAGCAACTGCAGTGCCATTTTACCTTCAGACTTGAGTGACAGAGAGACACTGGTCGTAGGGAGTCTACAATAACTAGTGAGATGCCGTCCCCCACAGCTCAGGGTCTAGGCCCAGGTCAGGAGAAGAAGATCGGTCACAGGAGAGTAGATGCCTCTGGAGAGACCACCTATAAGAAGACCACGTCCTCTGCCCTGAAAGGTGCCATCCAGCTGGGCATCGGCTACACGGTGGGCAACCTGAGCTCCAAGCCAGAGAGAGATGTCCTCATGCAGGACTTCTACGTGGTGGAGAGCATCTTCTTCCCCAGTGAGGGCAGTAACCTGACTCCTGCCCATCACTACCCAGACTTCAGGTTTAAGACCTACGCCCCTGTGGCCTTCCGCTACTTCCGAGAACTGTTTGGGATCCGGCCAGATGACTACCTGTACTCTCTATGTAACGAGCCCCTGATCGAGCTGTCCAACCCGGGGGCCAGCGGCTCCATATTCTATGTAACCAGGGACGATGAGTTCATCATCAAAACAGTCAATGCCAAGGAGGCGGAGTTTCTGCAGAAACTACTTCCTGGATACTACATGaaTCTGAATCAGAACCCGAGGACCCTGCTTCCTAAGTTCTTTGGTCTCTACTGCGTCCAGTGTGGTGGTAAAAACATCCGTATCGTGGTCATGAACAATGTGTTACCGCGCGCCGTACGCATGCACCTCAAGTTCGACCTGAAGGGCTCCACGTATAAACGGCGTGCGtcgaagaaagagagggagaaatcgAATCCCACCTTTAAAGATCTGGACTTTATATCAGATGTACCGGACGGACTGACACTGGATCAGGATACATATGGTGCTCTGCTTAAGACCCTACAGAGAGATTgtctgGTGCTAGAGAGCTTTAAAATCATGGATTACAGTCTGTTGCTGGGGGTCCATAACCTGGGCCAGGCTGGGAGAGAGTCCCAGGGCTCACCAGCAGGGGGCGATGAGAAGAAACCTGTGACCCAGAGAGCCCTCTACTCTACTGCCATGGAGTCTATACAGGGAGGCAAGACGTGTAGAGACACACTAGACCACGATGCTACaatgGGTGGTATTCCTTCTGTGGATGGTAAAGGAGAACAACTCCTTCTTTTTATTGGAATCATCGATATCCTGCAGTCCTACAGGGTCATCAAGAAACTGGAACACTCATGGAAGTCTCTGATTAGTAATGACGGGgacACAGTGTCAGTCCACAGGCCTAGTTTCTATGCAGACAGGTTCTACAAGTTCTGCAGCACCACTGTCTTCAGAAAGAGCTGCTCCCTGAGGTCTTCTCCCTCCAAGAGGGGGCGAGGAGGGGCTCTGCCCACACCCAAAAACAGTGTCCAAACACAGCTgtccatagagagagaggagaaccagGAGAACGAGAAGCTGCACCTCAGAGCGGCTCGCGGCTCCCGCCTGCTGGAGGAGGACGgtcaGAGAGAACACCCCCACACGCCTCCATCTTTTGAGGATGCGACCACAGCATCCATTGCGaccactctctcctccaacaACTCTCTCCCTACCACACCGTTTGACACACCAGAACACCCACGCTTCAGGAGGCCAACTCACTCTCCACGGGACCGTGAAGACAGTTTCAGGTCACAACTGGAAGTAGTGGAGGTGCACGAGCAAACCGTCACTGTGGCGATGGAGGTGAAGAGGGAACCTACaacctgTGTGGTTCCAGAGGACCTTCAGGACTCTAAAGTAACAGAGGAGAAAGTCATCACACAGGCCACAGCTGCTGCCCCCACCTCCTCTACACCTCCTTcaacccctccttcctcctccacccctccatcctccacccctccctcctcattCCCTCCAGCGTCCACTCTCCCTCATTCACTTCCTCAATCAATCTCTTCCTCCTCTGCCCCTCACTCTAACTCCACTCTGCCCTATTCTTTCACTCGTCCTTCCTCCACCCCTCAGTCATCAGCTGTCATCGCCTCCACTCTTCCACCCTCTGCAGTCCCTCAAGACTCCGCCTCTCCCTCTTCCACCACTCATGCATCTACcaatccctcctcctctccccattctTCACTCCttcccaccacccctccctcctctctccctccgagCCCCCAGGTGACAGCGGAACGCTATTCGTCCAATCATCTGTCTGTCACCTCGTCCGTCAGCCACAACTCACTGGAGGGGGAGATGCCAGTCTCTGACATCTACTTCTATGCTGATGGGAGATACTGGGTGTACTCCCCAATTCTGGGTCGTAAGAAACTCAACTCAAGCTCAAGCTGCAATAATCAGGAGGACAGGAGCTGGATGTACTCTCCGCTGCACTACGGCTCAGAGTCGAGACATGGCTCTGATGGGGAGAGCCAGACGTAAGTTGTGTGAAGTGTCCAATGTAAGCAAATCACTTGAGAGGATTGAAGACTACTGACTGAAGCTGTGATGCTTTACGAAGCCCCATGAATCTTCTACAGCGTTCTATAACCCTTGCGGCCCAAGCTGCATGTGAAGGCTAGTTTTACCCACTTGGATGAAGAAGTACTCTGTGGGAAGACTTATTGAAATGAAATGTTTCTACTTCGGCACCActttccccaacacacacacacacacacacacacgcacacacgcacacacacacacacacacacacacgcgcacacacacgcacacacgcacacag

Function

GO: NA

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848743 lncRNA upstream 94250 75984381 ~ 75985548 (+) True G747625
TU848736 lncRNA upstream 104330 75975243 ~ 75975468 (+) True G747618
TU848715 lncRNA upstream 123673 75955841 ~ 75956125 (+) True G747598
TU848714 lncRNA upstream 124321 75955193 ~ 75955477 (+) True G747597
TU848696 lncRNA upstream 141651 75937850 ~ 75938147 (+) True G747580
TU848797 lncRNA downstream 4366 76105860 ~ 76106084 (+) True G747672
TU848800 lncRNA downstream 9644 76111138 ~ 76111373 (+) True G747675
TU848810 lncRNA downstream 28142 76129636 ~ 76129889 (+) True G747685
TU848745 lncRNA downstream 41326 76142820 ~ 76144815 (+) True G747627
TU848853 lncRNA downstream 94896 76196390 ~ 76197507 (+) True G747728
XR_002474565.2 mRNA upstream 7892 76061869 ~ 76071906 (+) True LOC110530645
XM_021613860.2 mRNA upstream 35089 76007271 ~ 76044709 (+) True LOC110530643
XM_036986272.1 mRNA upstream 82744 75981648 ~ 75997054 (+) False LOC110530640
XM_021613864.2 mRNA downstream 109046 76210540 ~ 76211899 (+) False LOC110530649
XM_021613865.2 mRNA downstream 144211 76245705 ~ 76259908 (+) True LOC110530650
XM_036986282.1 mRNA downstream 219631 76321125 ~ 76326543 (+) True LOC110530653
XM_021613869.2 mRNA downstream 263597 76365091 ~ 76377798 (+) True LOC110530652
XM_021613871.2 mRNA downstream 288568 76390062 ~ 76406519 (+) True LOC110530654
TU847964 other upstream 696670 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 722641 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 751603 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 1045902 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 14199 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 138456 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 350076 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 605236 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1049169 77150663 ~ 77177349 (+) True G748905

Expression Profile