RNA id: XR_002474337.2



Basic Information


Item Value
RNA id XR_002474337.2
length 620
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110529140
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76423116 ~ 76425061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcgggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccatcagTGTTGCTTTCCAGTGAGGGTGATCATACCACACTAGAAAGTCAGGACAGAGattgggtctgctggATGACTGGGATAATTTCCTGATCCTATGACTCTGCGATGAGGTTGACAGTGTGATAAGGGGAGGTTACTACAGATGGTGTCTTGAGGAATAGCAGGGACAATTTGACCAAAAACGGTATGGACCTCAAAACCCCCTCGAAAACGACTGAAGAAATGGCATTCACTACGGCCTTGTCCTGCACCACTTCTATCGAGAGACCTGAGTCTGAGCCAGCAACCGGTGTAAAGCATCAAGTTGAAGTTATCGACTGTCTTTTCTCTCAGGAGTGCAACAGAAGTCCACGTGGAGGTAGCATGGAGAAAGATCCCTTCCAAACTTCCCTCATATTGCTGGTATACTGGTTGTCAAATGTGCAAGACATAATGAGTTGTGGTTGGGTTCAGGTGAGACATCCAAATTGGGACATTGTCATGGGTCATCCACTTTGAACTGTGAAGCTATCTGAAGAAGAAAATTAATAAATGCCAGAAGATTGAGTGCcggtggatggggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU849147 lncRNA upstream 186571 76236345 ~ 76236545 (+) True G747979
TU849133 lncRNA upstream 195688 76227209 ~ 76227428 (+) True G747965
TU848816 lncRNA upstream 211052 76210676 ~ 76212064 (+) True LOC110530649
TU848856 lncRNA upstream 222008 76200908 ~ 76201108 (+) True G747730
TU848853 lncRNA upstream 225609 76196390 ~ 76197507 (+) True G747728
TU849404 lncRNA downstream 6923 76431984 ~ 76432222 (+) True G748224
TU849422 lncRNA downstream 16232 76441293 ~ 76441507 (+) True G748242
TU849424 lncRNA downstream 19033 76444094 ~ 76444298 (+) True G748244
TU849470 lncRNA downstream 53787 76478848 ~ 76479172 (+) True G748289
TU849471 lncRNA downstream 55052 76480113 ~ 76480344 (+) True G748290
XM_021613871.2 mRNA upstream 16597 76390062 ~ 76406519 (+) True LOC110530654
XM_021613869.2 mRNA upstream 45318 76365091 ~ 76377798 (+) True LOC110530652
XM_036986282.1 mRNA upstream 96573 76321125 ~ 76326543 (+) True LOC110530653
XM_021613865.2 mRNA upstream 163208 76245705 ~ 76259908 (+) True LOC110530650
XM_021613864.2 mRNA upstream 211217 76210540 ~ 76211899 (+) False LOC110530649
XM_021613872.2 mRNA downstream 26161 76451222 ~ 76453376 (+) False LOC110530655
XM_036986283.1 mRNA downstream 101749 76526810 ~ 76720528 (+) False LOC110530656
XM_036986284.1 mRNA downstream 101749 76526810 ~ 76720528 (+) False LOC110530656
XM_036986285.1 mRNA downstream 101751 76526812 ~ 76647539 (+) False LOC110530656
XM_036986288.1 mRNA downstream 101751 76526812 ~ 76647539 (+) False LOC110530656
TU849158 other upstream 28787 76239950 ~ 76394329 (+) True G747987
TU848805 other upstream 307130 76115693 ~ 76115986 (+) True G747680
TU847964 other upstream 1039988 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 1065959 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 1094921 75327772 ~ 75328195 (+) True G746936
TU849434 other downstream 26509 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 281669 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 725602 77150663 ~ 77177349 (+) True G748905
TU850174 other downstream 754283 77179344 ~ 77180128 (+) True G748917
TU850224 other downstream 841591 77266652 ~ 77272660 (+) True G748959

Expression Profile