RNA id: XM_036986298.1


Basic Information

Item Value
RNA id XM_036986298.1
length 4451
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110530659
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77019461 ~ 77046447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAACAGAAAACCATGAACCTACAACGCCTTTGTGAACGACTAGCAAATAGACAAACACAGCAGcCCCAGATGATGCGGACGGAAAATAAAGCCCGGAGCGCCTCCCCCCACAGGAACGCCTATAAGTCTGACTTCCACACCATCAAATGCTCCTTGGATGCAGCGACCAGGCCTAGACCTTCTTCCCTGGGCGCCTCAATCCCTTCACCTGGCTCCATGGCAGTCCCTCACACCAGGACTAGCAGTGGAGGTAACCCTGGTGAGGGTACCAGGGGTGGGGCCCTCAGCCCTAGAGGAACTAAGATCAAAGACAACATCTTCTTCCAGATGGACAGCCAACAGCACCTCCTCCACCCCTTATCTGAGGCCCTGCCCAAACACCCTCTCAGCTCCAGCTCTCTCCGGAGCAGTGTGGCCAGCATGTCCAGTGTAGAATTGTCTATGCTAGATAAACCGTCTAAAGCAGAGGAGATAGCAGACATAGACAGAGCTGCTCTAGCCCAGAAGTTCTCGGTGACCCGGAAGCTCTTTGAGACGGTCATTGGGGGTCAACGTTTAAATGTCAGCCCTGGCAGAGATAGCAGGAGGTTGGTGGAGAGTGGGGAGGAAAGTGGGATTGGGAGTGCAAGGAGCAGGTTAGACAGGGAGCAGCTGACATCCATGTCAGAAagtgaaggggagagaaggaaagaactCATGCACATACACATTTCACTACCCAACATAGAACTCCATACAGCCACTTCCTCACTGGACACCAGTTTGCCTACACCCCTTCACCCTGTTAATGGTCACAACAGTGAGACATTTTCCCCTGACGGTAGAAGTCCTACAACTGACCCCTCAGACCGCAGGAATGTGTTagatgggagtgtgtgtgagaacttTGTGTTCTCCCATGTATCCAACCTTTCTAGCCCAGCACCCACCTCCCCCCACTCTCAGCCTCCATCCCCTTCTTCCAACTCCCCCAGTCCTCTCACCCCAGTCTCCCATTGTTCTGAACAGACTGACCTCTATAGCCCTAGTAGTCCTAATGCTGACCCCCTGGACAACAGGAGTTTGTCTGATGGGAACCACCCTAACGACCTTTACATGACCCCTGATGTCCCTTTGACCCCCAAAGAGGGGTCAGGGGCTGGAACTGTAAGGGCGGAGCTAGTGGAGGTGAAGAACGAGTCATCTGAGAGCGACggtaatgaaggagaggaggaaggaaagagggaggagggcaATGAGAATAACCTGGTGGATGATGTGTTTGAAGAATCCAGAGTGGAACCTAGAATAGTTGAACCTACATCAGCACAAAGAACagtagaacctaaaatggttgaCCCTACATCGGCACAAAGAACAGTAGAACCTAGAATGGTGGAAAAGAGAACGGTTGAACCTCCAGTAGAACCCAGAATGGCAGAGTGTGTGGAGGGATTCCCTGACAGTCTTGAAGTGACGGAACAGGAAAGTGAATCTGAAAGAGACATGAAACAgcaggagacagaacagagggaAGATCGAATGGAGGGAGAAAACAGACTGATCAGCCAAGAAATAGAGCAgcacagaggagaggggacaaCCGGAGACTGTGACAAAGTGGAGGTAGAGGTGAAAGGAGATGAGGCAGGAGAGCAGGAGGAAAAGGAACTTGAGGAGAGAGAAACCATGTGCAGTGACAGCAAAGAAAagatgagggaggaggtgagcgagggagaggaggaagcgaAAGAGAAGGCTGGATTGGAAGATGGAGGGATTGACTTCAGGGAAGAAGAGGAAAGAAAGTGCAGAGTGGAAGTGAAGGAAGagcaggagagggaagagagggagtgcactgagagaggagatgaggagaatgGATTTGCTGCCGTCCTTGGAATTGAGAATGAGGCCTTTATGGAGGATGGGGAACTGAACTCTGAGTGTCATGACGATTTGGAATGGCACAGAAAGGACTGGGAGCAGCTCTTTATGGAATATGAGGAGATTCCCAGTCTTCCCCATGAGGATGACGATGATGTGGATTCTGCTAAGAGGAGGAAGATTAAGTTCTCTGCAGCACCAATcaagGTGTTCCTGACCTACTCAAATGCAGACTATGACCGGCGTAATGATGATGTTGACCCTGTGTCTGCCTCTGCTGAGTATGAACTGGAGAAGAGAGTGGACAAGATGGATGTCTTCCCTGTCCAAATTAAGAAAGgaGTGGAGGGCCTGGGTATCAGTATAATAGGGATGGGGGTAGGGGCTGACCAGGGGCTGGAGAAGTTGGGGATCTTCGTTAAGACCATCACTGAGAACGGAGCTACACAACAGGACGGACGtatccaGGTGAATGACCAGATAGTGGAGGTGGATGGGGTCAGTCTGGTCGGAGTCACACAGCTGTTTGCTGCCACcatgctgaagaacaccatcgGCACTGTCAGGTTTTTTATTGGACGGGagaagcagggagaggagagtgaggtgGCCCGTCTAATCAATGAGAGTctggagcaggacaagacaccgtCTACAGTAGAGGTGATAAATGATGGTGTTGTCGGGCTGAGCTCAGTGGAGGAGACGGTAGAAGTCCTCCGTACAGATgatgaagaggagaaagaaatCACCAGCTGCATCAGATGCCAACAGCTCCAGTTAAAAGTCAGGACCAAATCAGACCAGCTCTGCCTAGTGCGGGAGAAGCTGAGGGGGTGTGAGGAGCAGCAGGCCTTGTGGGAGAGTCATCAGGCTGAGCTGAAGGAGCGTgtccaggatggagaggagaaggctGACAAACTAGAGAAGTACTGGCAGGAGGCCCAGGCTCTGTGCAGGATTGTGAACCAGCGATTGGCTGACACCCAGAGCCAATTAGACAGCCTGGAGGTGAAATACAGCAAGGCCAAGAGACTGCTGAGGGAATTCCAACACAGggagaaggagagcgaggggagagaggaggagctacagagagagatggaggagagcgagaggataCATGGAGAGACTGTGGAGAGACTCCAGAGACGGATAGGTCtactggagagaggggagatggtcCCTGAGAGTGACAACCAATCACTGGATACCTCATTTGCCTCAAgtgcAGACTGGAGCATTGCGGTGCCTGTGACAGATCTGTTAGACACCAGCGCTCACAGGGCCAGAGCACAGCTCGCCCAAAAAGCCAAGAGACACCCTCCCTCACGAGACAAACTCAGAGAGTCCTTCAGAcaacagGGTGAGGAAGACCATATTCAGAGCTGTGGCGGGAAGAGCCAATCACTGACTGCGATCGCACCACGAGAGACGGGACGATCGGTCTCAGCAGGCGGTCACCGTGTCCACTCCAGCACATCCTCTCTGTCTGCCCTCACCTCCAAGCCCCACCCCCCCTTTCTCCTCACCCCCCAGCCAGGCCAGTCCCCCCCTAAAGAGGACAAGTCATCTACCACACACAAATCAAAGAGGAGATTCCCTGACTTCAGCGGCCTCCGCAAGTctctgaggagagggaggaagtgtgAGGAGAAGAAGAACAAGGAAAGGCCCCTGGACCACAGGGGTTTATGTGTTAACCTGATAGATGCCCCCAGCGGTGgtgtctttccctctgtctcctccgtGCCCTCCTGCCTACCCTTCTCCTGGTtcggagagcgagggagggagaaggagagagggaagcttAGGTCTGTCTCCAGCAGCAGTCTACCGTACATGACCACCGGAGGCAGTAGAGACTGCCAGAACCTGGATGATGACTCTGTCCCAGTTGGTAACGATTACCAATGGCAAAGCCGACCCCTGGACCAATGGACTAATCAGCAAGTCTGTCTGTGGTTGATTGGCATGAGCATGGACCAATACGCGGCCCAGTTCACAGCCAATGGTGTGGATGGGCTGCAACTtctcagtctggacaacaacaaacTCAAGgCTCTGGGTGTGTGCAGTCACAGTGACCGTGCTGCTCTGAAGAGAAGGCTGAAGGAGATGAGGAagactctggagagagaggaaaaggagagagcaaagggaaaggaggagagggaacatgagaagaggatgaaggagagaaaggaggccAGGCATAGTGGTAAAAAGGTCCGAAACGAGTCCCTCTGCTGAAGTCTGGACCCTGACCTCTAATCCCTAAACCCGGAAATGATCTTCAATCACAACTTTTTGTCTAAGTCCTACTACTATTAGGTTAATCTCATGCATTCCAGCCATTAGACAATCAGCTATAGTCTCTCTCTTATAAACTCTCTACCAGCACAGAAACGTCAGTCTCACTGTTAGTCTTCACTGTGACTAGTGAAATATACTTTATCTGTTTTGTAACAGTATTTATGTACAGATGTTTCTATACAAATGTTGTACAATTGATTGCAATGAAGCAGTCAAATATTTTAAGCTGGTAATATTTTACATTCATTAATAAATAATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850065 lncRNA upstream 23523 76993282 ~ 76995938 (+) True G748826
TU850027 lncRNA upstream 86145 76932724 ~ 76933316 (+) True G748793
TU850026 lncRNA upstream 86331 76932724 ~ 76933130 (+) False G748793
TU850012 lncRNA upstream 104586 76914676 ~ 76914875 (+) True G748779
TU850009 lncRNA upstream 107875 76911360 ~ 76911586 (+) True G748776
TU850126 lncRNA downstream 42753 77089193 ~ 77090382 (+) True LOC118965635
TU850135 lncRNA downstream 64031 77110471 ~ 77110683 (+) True G748889
TU850136 lncRNA downstream 64449 77110889 ~ 77111108 (+) True G748890
TU850155 lncRNA downstream 87329 77133769 ~ 77134439 (+) True G748900
TU850158 lncRNA downstream 96764 77143204 ~ 77173163 (+) True G748903
XM_036986283.1 mRNA upstream 298933 76526810 ~ 76720528 (+) False LOC110530656
XM_036986284.1 mRNA upstream 298933 76526810 ~ 76720528 (+) False LOC110530656
XM_036986291.1 mRNA upstream 344449 76526816 ~ 76675012 (+) False LOC110530656
XM_036986286.1 mRNA upstream 344545 76526812 ~ 76674916 (+) False LOC110530656
XM_036986290.1 mRNA upstream 349009 76526812 ~ 76670452 (+) False LOC110530656
XM_036986884.1 mRNA downstream 40695 77087135 ~ 77089305 (+) False LOC118965635
XM_036986302.1 mRNA downstream 81046 77127486 ~ 77155564 (+) False slc25a12
XM_036986303.1 mRNA downstream 81258 77127698 ~ 77155564 (+) True slc25a12
XM_021613888.2 mRNA downstream 135424 77181864 ~ 77210814 (+) False LOC110530663
XM_021613889.2 mRNA downstream 135424 77181864 ~ 77210814 (+) True LOC110530663
TU849632 other upstream 311817 76706730 ~ 76707644 (+) False G748432
TU849434 other upstream 567024 76451570 ~ 76452437 (+) True LOC110530655
TU849158 other upstream 625132 76239950 ~ 76394329 (+) True G747987
TU848805 other upstream 903475 76115693 ~ 76115986 (+) True G747680
TU847964 other upstream 1636333 75379502 ~ 75383128 (+) False G746951
TU850161 other downstream 104223 77150663 ~ 77177349 (+) True G748905
TU850174 other downstream 132904 77179344 ~ 77180128 (+) True G748917
TU850224 other downstream 220212 77266652 ~ 77272660 (+) True G748959
TU850462 other downstream 256297 77302737 ~ 77356024 (+) False G749137
TU850453 other downstream 307197 77353637 ~ 77356024 (+) False G749137

Expression Profile