RNA id: TCONS_00036795


Basic Information

Item Value
RNA id TCONS_00036795
length 582
lncRNA type read_through
GC content 0.45
exon number 3
gene id XLOC_017904
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7191883 ~ 7211196 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaaaatgttgaaaaccagtaaccatccatagtaggaaaaacaaaaagtCTACTATTACTGTGCCAACCGGTCTCTGACATATTATTAAAActtctttttgtttgttagttagaaagaggaaactcaaacagatttggacaagtgaaggacTCATTAGCCTTGCAGAACTGCTGTAAAGACTATCCATGGAGGACATTTGATGTGCAGCTACTATACATGATTCCATACCCAGTTATCCGGACTCAAACATTTCGGCTGTGTTCCGCTCCTTATTTTGAGATGCACATGGTCTAGATATCACACTTCGAAACTGATCTCCCTTGAGCGTCCAAACAGAGGCTCAGTGAGGAGGTGCGTGTCTGAGAAGCTGCGTCTCAGCTGTGTGGAGCTCCTGGTGGTTTTGATGGCCACTTCATATGGCGGAGGAGGCTCCAAGTCCCAGTGAGGCGGCCGGACACGACTGGTAGGACTGAAACACGTTGGCTCCATTGGTGGATAGTCCAAATCTTCACCGTATACACCTCGTCTTTGCAAAGTCCTACAACACACAAGAACACCGTACAATTAAATGACAAAACGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036448 lncRNA downstream 52741 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 711370 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036794 lncRNA downstream 977126 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035311 lncRNA downstream 1019888 6167295 ~ 6171995 (-) True XLOC_017890
TCONS_00035305 lncRNA downstream 1156813 6033785 ~ 6035070 (-) False XLOC_017888
TCONS_00036796 lncRNA upstream 400959 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036797 lncRNA upstream 740586 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00035342 lncRNA upstream 911497 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035348 lncRNA upstream 1583306 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 2865961 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035327 mRNA downstream 15073 7149100 ~ 7176810 (-) False XLOC_017903
TCONS_00035328 mRNA downstream 15074 7160240 ~ 7176809 (-) True XLOC_017903
TCONS_00035326 mRNA downstream 58337 7122687 ~ 7133546 (-) True XLOC_017901
TCONS_00035325 mRNA downstream 63170 7122590 ~ 7128713 (-) False XLOC_017901
TCONS_00035321 mRNA downstream 111413 7070634 ~ 7080470 (-) False XLOC_017900
TCONS_00035329 mRNA upstream 51238 7262434 ~ 7293837 (-) True XLOC_017905
TCONS_00035330 mRNA upstream 232028 7443224 ~ 7582936 (-) False XLOC_017906
TCONS_00035331 mRNA upstream 266908 7478104 ~ 7583486 (-) False XLOC_017906
TCONS_00035332 mRNA upstream 332401 7543597 ~ 7547080 (-) True XLOC_017906
TCONS_00035334 mRNA upstream 435566 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035322 other downstream 120272 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 379203 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 608213 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035301 other downstream 1196180 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035300 other downstream 1577887 5613879 ~ 5613996 (-) True XLOC_017885
TCONS_00035333 other upstream 401086 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035337 other upstream 775754 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035340 other upstream 911497 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035349 other upstream 1725707 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 2432869 9644065 ~ 9651062 (-) True XLOC_017922