RNA id: XM_036986335.1


Basic Information

Item Value
RNA id XM_036986335.1
length 2903
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110530682
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77710139 ~ 77728323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGCTGGTAACAGGAGAAAGCTGCCTCTCCCTCTAGCCATCTATCAGCTGCCTCTCTGTAGGCTAAAGCCAGGTAGGAGACTAGAAGGACAGGCTGGGTGTATACTGCAACACAGTGGAGTACAGAGTTGCTACGTTTGAGAGTTGGTTTACATAGTCAGTGCAAATACCGTGTGGAGTAGAGAGGAGCTcagtgggagtgggagagacGCTTAACCACTCCAGACCATGAACATGGAGCATCGGAGGTTCTCCCTCGACAGCTCAGTGTCCCTGAAgaatggtggtggaggaggtagtCTGGGCCGTAGGAGAGGCAGCCGCAGTAAGAAGAGCAAAGAGAAGTGGAAGAGTCTAGAGGAGGCCCAGCTGGAGATCCAGGAGCTGGGACACAGCCTGAACAGGAGCAACTCTCTCAGGTCAGAGACCATAGAGGAGGAGAGCTTCCACCCGCCTGATGGCGCCGTTGCCAAAAATAGTTTTGTGAAATACAACAAAACCTTCCACAAATTCTTCCGAGACATTCCTACAGAGGAGAAACTAACTCATGtgttcaccTGTGCCCTGCAGAAGGAGGTGTTGTATCATGGGAAGCTATTTGTGTCTGTCAACTACGTATGTTTTTACTCCTCCGTACTCCTCAAGGACACCAAGGTTGAGGTCCATGTGTCCAGCGTAAAGGAAGTGAAGAAGCAGAACTCAGCCCTGTCTATGCTCTCCATCCGTACTACTGATGGAAACAAGTATTCGTTTGTGTCTTTGCGGAACCGGAGAGTGTGTTATGAAATCCTGCAGTCTGTGTGTTCACAAGCACAGCTGGGGGAGCAGGTGGAGAATGGCAACAGCAGTCCCCACTTCTCAGGAGAGAACGGCGTTGATGGCGTGGATCGGGACACAATCTCCAGCAATTCCAGCCGGGAGGACAGTGTGGAGCGGAGCCTTCCTATAGAGGCCGTCTACTCTGACCTGCCCAGCAGCGCTGACTCGTGGGTTTGGATCGTCACTGAAAGGGTTAAAACCCTCCTACTTATCAGAGATATGCGCAACCTCAATGTCCTCCTATCCATCTGTCTGTTTCTggcGGTGTTGCTAATACTGTCATCGGGGTACATCGGTTTGCGGATCGTAGCTCTGGAGGAGCAGCTGAGTTCTCTAGGAGCCCTGCCGGAGCTCTCCATACACCTCAGAGAGGAACAGGAAACAGCCTGACGAGACCTACAGCCAGGGAGGATTGGCCATTTGGATATTCTGGCAAATACCAGACGGGCTGGACCATTTTTTTGTTGGGTGGGCTGGTTGAAAATGGACactttttattatatatatattttttaacgtTTGTTAAGAtagaaattgtaaaaaaaaataacactaATAATTCTGTTATGCTAATATGCccggagtatacaaaacattaagatggACCGGTCCGGTTTTCTGCTAGGCTGAGGTCACACAAACTCACATTGAAAGTCAAACACAGCATCAGCAAAGATGACCTGCTTCAACTCTGTCATCAGTTAGACAGCCAAGATCATGGatcattaaaaaaatgaaaagggTGCCTGTAAACGTAGAAAGAGCATATTCTACATTGTCACTTCACTGAAAAACATCTGAATTTTGGGACAGCTAAAGAAATGATTTTGCCAAACAGTGAAGTGcattatcctcatgattcctgtaatgaaAGTGTCTTCCCTATGCCCTCGCTGGGGCCTACTGCTGTGGTGAGCgagccactctcctctccttccacacaCTCGAGAGAAACATTTATTCTGATCATATAACATTTCAAAATGAAATTGCGGGAAAAAAACACAGCTTTGGAAGCTTCATCCAATTGTCCCTGTCGAAGAGAGGAGGGTTTCAGCTTTCTGTCGGTATAATCTTTATTTCTCAACTCTCATTAGCAACTATTTTACAATCAAGACATTTTATATGGCTTTGAGATATGGAGTGGAGTGTGCTCAAAACATGCACCAGCATAGGCCTCATGGGTAGTAGCCTACAACTGGACGTTTTTTTAGGACATTACAATTACGGTTGGATGAATACATGGCTACTAGCAGTGGGTATCACAGGCGGCTGGGGGCACCTTAATTGTGGaagacggctcatagtaatggctacaatggagttaatggaatggtatcaaacatatcaaaAACATTGTTGTTTCAAAgtgcttgataccattccatttacggCATTCCAGACATctttatgagccatcctcccctcactaGCCTCCGGTGGTGGGTAATATATTTAGAGTTTGATCTAATTAATGCGTTTTGAGTTTCCACTTCCTCAGGTGTTGAACCACAAATTAATTAGCCTATGATTTTAGTTAGTGCACATAAAACATGTAATTCATCTCtggaacaaacaaaaaaacgaatATGGATATTCTGGAATCCTATTTTGACAGTAAAATAGCAACTATAGTCTAATTGTCAACCCAAAATTCATGACAATCACTGGATTTGCACATCAAAATATCTTGAATCATGCTTAGACATGTTTCTTGAGCTAGTGGCGTGCGCAGTGGTGGGCCAATGTGAATGAAATAGCAGAGGAAAATGATTTTCCCAGTGCGGCCCTGCCTACAGTAGGAAGACTAAATACCAAAGACACAGTACAACAAACTACAGTATATAAAGGGTCTCAATTAATATGTAATCTCATGAGCTGGGCAAttgttaatatatatatttatgtgggTCCCCTGATCATTTGAGGAGACAGATCACTTAAACCTCAAATATGGAAAACCTTGACTTCACACAAAgcagctttttgttgttgttgctagccTATATTTCATAggatctttttttttgttgttgctagccTATATTTCATAggatctttttgttgttgttgctagccTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850697 lncRNA upstream 11851 77694849 ~ 77698288 (+) True LOC110530680
TU850751 lncRNA upstream 74216 77634567 ~ 77635923 (+) True G749390
TU850707 lncRNA upstream 134992 77574003 ~ 77575147 (+) False G749347
TU850708 lncRNA upstream 134992 77574003 ~ 77575147 (+) True G749347
TU850693 lncRNA upstream 158114 77551788 ~ 77552025 (+) True G749338
TU850826 lncRNA downstream 83492 77811815 ~ 77812707 (+) False LOC118965560
TU850827 lncRNA downstream 83492 77811815 ~ 77814091 (+) False LOC118965560
TU850828 lncRNA downstream 83492 77811815 ~ 77814091 (+) False LOC118965560
TU850829 lncRNA downstream 84540 77812863 ~ 77814091 (+) True LOC118965560
TU850865 lncRNA downstream 106790 77835113 ~ 77838062 (+) True G749482
XM_036986330.1 mRNA upstream 11849 77559351 ~ 77698290 (+) False LOC110530680
XM_036986332.1 mRNA upstream 11849 77559351 ~ 77698290 (+) False LOC110530680
XM_036986333.1 mRNA upstream 11849 77559351 ~ 77698290 (+) False LOC110530680
XM_036986334.1 mRNA upstream 11849 77559351 ~ 77698290 (+) False LOC110530680
XM_036986331.1 mRNA upstream 11849 77563170 ~ 77698290 (+) False LOC110530680
XM_036986337.1 mRNA downstream 14026 77742349 ~ 77811376 (+) True LOC110530992
XR_005052959.1 mRNA downstream 83587 77811910 ~ 77815920 (+) False LOC118965560
XM_036986339.1 mRNA downstream 135267 77863590 ~ 77884391 (+) False LOC110530993
XM_036986340.1 mRNA downstream 166665 77894988 ~ 77919487 (+) False LOC110530683
XM_036986341.1 mRNA downstream 166665 77894988 ~ 77919487 (+) True LOC110530683
TU850461 other upstream 327528 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 354115 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 354115 77353637 ~ 77356024 (+) False G749137
TU850224 other upstream 437479 77266652 ~ 77272660 (+) True G748959
TU850174 other upstream 530011 77179344 ~ 77180128 (+) True G748917
TU850834 other downstream 155914 77884237 ~ 77887356 (+) False LOC110530993
TU851066 other downstream 515887 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 1068819 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 1250907 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1466947 79195270 ~ 79197378 (+) True G750935

Expression Profile