RNA id: XM_036986337.1


Basic Information

Item Value
RNA id XM_036986337.1
length 4969
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110530992
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77742349 ~ 77811376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCATGCATTGTGGGGTGCTTTGTCATTTTGAAACGTTCCCTGAATATTTCTGTCCCTGTGTTGGTggtgctaaatatgtgtatgcgaccaataacattcgATTTGACTTGATGTATTTTTGTATATTGGAGACATTCTGCGTTGGTATACTTCCTCAACATAGTGTTGGAATATATCCATTATAGCCTGAGCCTGTGCTAGCTGAGAGCTTGACCAGTATCTTTCTTCGGCTGTCAAGGGAGCACTGCATGCAAACCTGGAAAGACTGCACAGCTGGGgtccacagacagagagaatgaatTAAGACAGAATGAAAAGACTCGTGAGTATTTTGTCTGCACATATAGCCTAAGCCTTCTGGTCATTTGAAGGTGACGCTTACCCCTCTACACCGACTATAGCCCACTCTTGGATTTCATTGTGTGATTTGCAGGGGTGCAAAAAATATCCTTATCTTCAAACAAGGCACCGAAATGTAGCCTATAAAAAAAGCACTGCATCTGCGGGTACCATATTTCTCTTTTACCCGGGAAAGGTTTATTGGAAAGGTTTGACCTGGTCTGGACGCGTTCACTGGAAGATAACGGGGATGCCACGGTTACGCGCAGAAGCCGCTCGAGGAAGAGACAGGTGCGGCAGAGGGGATTGGTAGTTTAATAGCCGATTCTCATCCAGGCATTGTGATTACCAAGACCCAGAGAGAGCTTGGTGCCCTGCTCCACcctttgtgttgatttcagacgTGGAGGAAAACCCGTCTGCGTACGAGAGGACGACTGGCAACAAACCAGACATCGCCTGCTTACCTGTCCATCTCGCACAGTGAATGTGCCCGTGCTGTGCTGCCATGACAACCATGGCCCCTCCCTTCAtgtttctcctccttctcctccgattgGCTCACAGTTCTTTCCCAGAGGAGCCCGGTCCGCTCAGCTACGCTCCCTTAGAGGTGGTGAGGAGGtatcctgtgtttgtgggtagagcTCATCATTCCTCTCAGAGACAGGACCTGCACATTCAGACAGTGCTCCAGGTCAACCGCACTCTCTACATAGGAGCCAGAGACGATCTATACAGAGTGGAGCTGGACAATATGTCAGGGGATGAAATGTTCTACAGcaagAAGCGGACGTGGGAATCCAATAAGAATGACATTCGAGTCTGCAGAATGAAGGGCAAACATGAGGAGGAGTGTCGTAACTTCATTAAGGTGGTGTTGAGTCAACATGAAGGACTGTTTGTGTGTGGAACCAATGCCTTCAACCCTTTGTGTGCCAACTACACTagagacTCTTTGGAGATGGTGGGAGAGACGGTCAGTGGGATGGCTCGTTGCCCGTATGACCCCAGACACGCCAACGTGGCTCTGTTCGCAGaGGGCAGTCTCTTCACTGGTACTGTAACAGACTTCCTGGCGATTGATGCTGTGATCTATCGTAGCCTAGGCGACAGCCCCGCTCTTCGCACTGTCAAACACGACTCCAAATGGTTCAGAGAACCCTTCTTTGTGAGTGCAGTTGAGTGGGGGCCTCACGTCTACTTCTTCTTCAGAGAAATGGCCATGGAGTTTCATCACCTAGAGaaggtgatgGTATCTCGTGTGGCGCGGGTGTGCAAAGGGGACATGGGGGGCTCTCAGAGGGTGTTGGAGAAACAGTGGACATCGTTCCTGAAGGCCAGACTGAACTGTTCTGTCCCAGGAGACTCCCACTTCTATTTCAACCTGCTCCACGCCACCAGCCCCATACTCAACATGAACGGCAGAGACGTCATACTGGGACTGTTCTCGACACCAcccaacagtatcccAGGGTCTGCAGTCTGTGTGTTTGACATGCAGCAGTTAGCCAGGGTGTTTGAGGGAAGATTCAAGGAGCAGAAATCTCCAGAATCCATCTGGACACCCGTGCCTGATGAGCTTGTGCCCAAACCCAGgccGGGTGGCTGTGCGGTGCAGGGGTCTCCTTTCAGCTCATCTAAGTCTCTGCCGGATGAAGTGCTGAACTTTGTAAAGACTCATCCCTTGATGGACGAGACCATACCCTTGGTTGGGCACAGACCTTGGGTTGTCAAGACTATGGGCAGGTACCAGTTGACCGCAATGGTGGTGGACACAGAGGCTGGTCCCCATAGGAACCATACAGTGTTGTTCCTGGGCTCCACGCGAGGGACCGTCCTGAAATTCCTCATCCTCCCCAGCGGAGAAAACTCTCCCACACACAGCAGTGTGTttctggaggaggtggagggattcAACCCTGAGAAatgTGGAGAGGACTCGGTCCAGGCCAGACAGTTGTTGTTTCTGTCTCTGGATCGTCCAAGTCACACTCTGCTGCTGGCCTTCACTTCCTGTCTGGTCAGACTGCCCACAGCACGCTGCCACCTACACTCACGCTGTATGAAgagcTGTCTGACCTCCCGAGATCCCTACTGTGGCTGGACCAGAGGCAGCACCTGCTCCTTCCTCAGACCAGGCACACGgcttccttttcaacAAGACAGTGAGTACGGCAACTTCTCCCATCTTGGAGACTGTGATGGTGCCATACAGCAGAGTCTGCTGATCGAGCCGGAGAGCCTGGTCTCCCTCAACCTGCTGGTGGCATCTGCAGTCTCAGCCTTCACCATCGGTGCGGCGCTCTCGGGGCTGGCTGTCTGCTGGATTATGGCCCACAAGCCTGGCAACCGTCGCCACGGCAACAATACCCCCCAGTCCACTATCCAGCGCCAGGAGAGGGGGATGTTGACGtcaggaggagggatggggggatcGGTCCTCAGTGTGACCCGTCAGGGAGGAGGCGATAGACCCTGCTCTCAGGGCGGGGAGACCCTGTTTGTGATGCCCAACGGCTGGGGGAAGTCAGGGGAGCTGGACCCAGGGTTCCTGCCTACTCCGGAGCACACGCCCCAGCAGAAAAGACGCGGGCTCAGGCTGTCTGATTCTGGATCAGGGGGGTGGGATAACAGCCAGACCTACCTGGGAGGGAGTACCATGGGGCTGGCGTCTCCCTGCCCTCTCCCTTGCCCCCCACACCCCTCCACCGCTGTCtacctgaccaccagactatttcaggggggaggaggagggaggcacGGGGGTGAGGagcgaggaagaggaggggagactCCTCGCCAGCACTACGTGTGCCTGAGCAAGCCCCGGGGGGAGAAGGGCAGAAGTGGGACACCGAAGTCGGCGCTTCGTAAGTCGGCAGGGGAGTACGTGTACCCCATGACCCCCCAGGATTCTCCGGATAGGAGGAGGGTGGTGTCAGCCCCCAGCGCCCCTATGGAGTTTGGGGAGCCCCTGCCACTCCGCTGGCCTCCCCAGGAAGGCTACATCCTCAGCAGCCAGGGCATGGTCCCTGTACCTCCATCCTCCATGCCCACCATCAAAGGCCAGCAGTACGTGGCCCAGCACCACACACCTGGGCCGGGCAGGTCTCAGCTGAGAGGGGCCTTGGGGAGAGGAGAGCTGGGGGAGCTGGTGGATCTCAGCCAGCTGCTGAGTAAGAAGAGTTCCAATGAGAGGACTCACAACGGGCAGTGATCAAGCAGGGAAACCATGTCTCTTTCTATATcgttctctttctgtctgttctacattttctctcactctctctttctctctgacctcTTTCTCTGTCATTGTCATTTAGTCCTCCGGATATCTCTGTATCTCGCTGGCGGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTAGGAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCGCTGGCAGACTCCTGAGGCTGTTCTCACTGGCAGACTCCTGAGGCTGTTCTCTCTGTGACTGGTTGATGCTGCTATCACTCATACCCTGCTTGGCTGTGATTGGTCAGTGGAAGTGAGGTTGTTGCTGTGTCTGCATTGCAGAGCTGCCTCTCCCCTCTGGCTgcttagagaggggagagaggaggagagagagatagcgggATTGAAAGAggtgagaaagagggatggagatggaaagagaaaaggGAAGGAAGAGTTTGCTAGACAGCAGAATTCTTCCAAAAGAACACATTAAGAGAGAACCATAAATAGGAAGGAACATGCAAAGAGACCCAGAGACAGACACTTCCCTGTGCAACAAACAGGGCAACAAGGACTGACCGAACAACATGGCCACAGAGCCCACTGTCAGGTGTCAGAAGACGAGACCCAGTGGACATCACTCCTACACAGTGTACTTTGTCCACCTTCCAGTGCAGACTGATTGGCACTCTCTGACAATAAGACAATGGAGGACACTGAAACATGAATTGTAAACACATTACTTTGAAGCATCTTGCTGCAGGTGAATGAAGCAGACACCCCCCTGGGCTCACACGTCAGATCATCATCTACTTTTGATTTACACTTGATTTACAACTCAACCAAAACTGTGATTTGGTTCATAATAACGTGAATTTAATGTGAAATCAACGAGAAAATGTCACCAggtcattggatttaggtgaaCAGTTGGGTGAAAACAAGACCAAATGCCCCtacgttgattcaatgtcatcacatagatttctggtgttgaaatgacgtggaaacaatgttgattcaaacagtttttgcaGAGTGGGACTGTTCTCTCTCAGTAACACTGAGGTCattctgactctgactctgaatGTCACGAGAATATCTGATGAAGAGTGTCGAAAGGAAGCGGCAATGAAGATTTAATAGCCTGCCCTCCAGCTgcctccccaacacacacacacacacaggtcagtttTAATAAACCCACCCTGCGGGGGACCAGTCCTTGGTATCGTGGTGAGGGGGACATTGATTCCCAGTGTATGTGAGTCGAGAGGGGGTGTATAGTACCGCTCCTAACCTGTCTCACTGGG

Function

GO: NA

KEGG:

id description
K06842 SEMA6; semaphorin 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850697 lncRNA upstream 44061 77694849 ~ 77698288 (+) True LOC110530680
TU850751 lncRNA upstream 106426 77634567 ~ 77635923 (+) True G749390
TU850707 lncRNA upstream 167202 77574003 ~ 77575147 (+) False G749347
TU850708 lncRNA upstream 167202 77574003 ~ 77575147 (+) True G749347
TU850693 lncRNA upstream 190324 77551788 ~ 77552025 (+) True G749338
TU850826 lncRNA downstream 439 77811815 ~ 77812707 (+) False LOC118965560
TU850827 lncRNA downstream 439 77811815 ~ 77814091 (+) False LOC118965560
TU850828 lncRNA downstream 439 77811815 ~ 77814091 (+) False LOC118965560
TU850829 lncRNA downstream 1487 77812863 ~ 77814091 (+) True LOC118965560
TU850865 lncRNA downstream 23737 77835113 ~ 77838062 (+) True G749482
XM_036986335.1 mRNA upstream 14026 77710139 ~ 77728323 (+) True LOC110530682
XM_036986330.1 mRNA upstream 44059 77559351 ~ 77698290 (+) False LOC110530680
XR_005052959.1 mRNA downstream 534 77811910 ~ 77815920 (+) False LOC118965560
XM_036986339.1 mRNA downstream 52214 77863590 ~ 77884391 (+) False LOC110530993
XM_036986340.1 mRNA downstream 83612 77894988 ~ 77919487 (+) False LOC110530683
XM_036986341.1 mRNA downstream 83612 77894988 ~ 77919487 (+) True LOC110530683
XM_036986342.1 mRNA downstream 143341 77954717 ~ 77963861 (+) False LOC110530684
TU850461 other upstream 359738 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 386325 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 386325 77353637 ~ 77356024 (+) False G749137
TU850224 other upstream 469689 77266652 ~ 77272660 (+) True G748959
TU850174 other upstream 562221 77179344 ~ 77180128 (+) True G748917
TU850834 other downstream 72861 77884237 ~ 77887356 (+) False LOC110530993
TU851066 other downstream 432834 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 985766 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 1167854 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1383894 79195270 ~ 79197378 (+) True G750935

Expression Profile