RNA id: XR_005052959.1


Basic Information

Item Value
RNA id XR_005052959.1
length 3954
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118965560
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77811815 ~ 77815920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCATACAGTACTGCTCTTAACCTGTCTCACTGGGTCATACAGTACCGCTCCTAACCTGTCTCACTGGGTCGTACAGTACTGCTCCTAACCTGTCTCACTGGGTCGTACAGTACCGCTCTTAACCTGTCTCACTGGGACCAAGGGACTATAACTCACCCTCACTGGGCCGGACTGGAATGTCAGCACTATTTCTGCCAGCCAGGCATTCTCTCTAATGACATGGCAccatttcatccctccatccgtcCATTCCTTCACTTCATCACTCTATCCTTCCACTCCATGTACTTTTTAATGGCCAGTCATTTCAGAGCTGACGCAATGTGTTAGGAGCAGTACTGTACGACCCAGTGAGATAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCTAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGTCAGGTTAGGAGAAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACAGTACGACCCCGTGAGACAGGTTAAGAGCGGTACTGTATGACCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGAcccagtgagacaggttagtAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAAGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTATACGCCCCAGTGAGACAGGTTAGGAGCAGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTGTATGACCCAGTGAGACAGGTTAGGAGCAGTACTGTACGACCCAGTGAGACAGGTTAGGAGCGGTACTATACACCCCCTCTCGACTCACATACACTGGGAATCAATGTCCCCCTCACCACGATACCAAGGACTGGTCCACCGCAGGGTGGGTTTATTAaaactgacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcagaTGCACTGGCTATGCGTGTGATTGATAATCACTATGGTTGTGATTGAAACGACTGTCCTGACTCTTACTCATCCATGTTAATGGACATTTTCCCAGAGCTCAAACGGGACCATACATTCTATCCGTCAAAGTGTCTAATGAGAAACTTTCCATTACTTTAAGTGATCATGGAAAGAGGGatagatagaaagacagagggaaaagACGAAAGGCAGGAGGaccgagagagaaacagaaaggcagagtgagaaagagagagacaacactgagACAAGGAAGAAGATGTGATCTGTCATTCCCAAGTCATCAGAGCCACAGCTCCAGTCACATCCAGAAGGAAAATTAGTTCAGCTCTGTTGTGAACCTGAGCAGTAATGACTTGTATATAAAGACCCAACCCCAGTCAGATGTCTGTGTTACCGTTGAAGGAGCACAATGATGACGTCACACATGGGGTGTTGTTTCAAGACCGAGTCACAGTTACAAGACACTCATAATCACACCATGCCGATGACTTTTCGCCCTTTGTTGTCAATACAAAATTATGTGCCAACATTCTAAACTGTACTTTTGGGTGACATACGGACCACAGAAGCAAAAAGGAAACATATTTTCAAGTGCCATAAAAACCATGTCAGTACATTTGATTCTTTATACATTTGATACTGTGATGTTGTATAATTTGTTCAAATGTGTACAGTTCCTGTGTACAATGAGGAACTTCACAATGTTGCCTTCAGATAGCATACTGAACATTGATTTTCTTTCATAACTATTTTGACTTTGCTGCTCTTATCCATTTGATAAAGTTGATGCCACTGACAGTCTGTTTATAAACCACTTATAAACAGTAGTACATCATTTAGGtcagtttttcctgaaatacTCTAGCAAAGTATTGATTGTTTTTCTCCACACCAACAAACTGTCATACTGAGGAACCTTAAAGTCCAAGGCTACTTCCTGTTCATAATACTGTGCAGTAATACATCATGGAAAAGCACAATAACTTTTATTTTTCTTATTTGAAAAGTAGTTGTACTGTAACGTTATCTATGTATATTTGTGTAAATAATCTATTTGAAGGTATCTTATCCATGTGGTTTTaaggttgttgttttttcatCCTTGACACAGGCCTTTGACGTGTTGGTTTTGGTTGACTGTGATATGAATGAGATGTAACAGAgcaggctggtgggaggagctataggagaatggGCTCTTTATAGTGGCTGGAATGGAACGGTGTCTgacccaccagccaccactgagATGCAAGTACAGGAATTACAGTATTTACCTTTGACTGAAAGCTGAGGGTAGCTGTTTTCTTTCTAAAAAGAGTAGAATCGTAGGCTTGTCCTGCTGAGCTGAATGAAAAAGGTCTCCATATTATTTGATTTATGATTTACggctgtacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacattaaacactTAATGTGAGAGGATACAGCAGTCAGTTAATATGGACAACCCTGTCAATATATTCTTTATTATTCTAATAAACAATGAATATGTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850696 lncRNA upstream 48089 77694849 ~ 77763821 (+) False LOC110530680
TU850697 lncRNA upstream 113622 77694849 ~ 77698288 (+) True LOC110530680
TU850751 lncRNA upstream 175987 77634567 ~ 77635923 (+) True G749390
TU850707 lncRNA upstream 236763 77574003 ~ 77575147 (+) False G749347
TU850708 lncRNA upstream 236763 77574003 ~ 77575147 (+) True G749347
TU850865 lncRNA downstream 19193 77835113 ~ 77838062 (+) True G749482
TU850880 lncRNA downstream 45706 77861626 ~ 77861843 (+) True G749496
TU850832 lncRNA downstream 69675 77885595 ~ 77887356 (+) False LOC110530993
TU850833 lncRNA downstream 69675 77885595 ~ 77887401 (+) True LOC110530993
TU850890 lncRNA downstream 73976 77889896 ~ 77890344 (+) True G749506
XM_036986337.1 mRNA upstream 534 77742349 ~ 77811376 (+) True LOC110530992
XM_036986335.1 mRNA upstream 83587 77710139 ~ 77728323 (+) True LOC110530682
XM_036986332.1 mRNA upstream 113620 77559351 ~ 77698290 (+) False LOC110530680
XM_036986339.1 mRNA downstream 47670 77863590 ~ 77884391 (+) False LOC110530993
XM_036986340.1 mRNA downstream 79068 77894988 ~ 77919487 (+) False LOC110530683
XM_036986341.1 mRNA downstream 79068 77894988 ~ 77919487 (+) True LOC110530683
XM_036986342.1 mRNA downstream 138797 77954717 ~ 77963861 (+) False LOC110530684
XM_036986343.1 mRNA downstream 139938 77955858 ~ 77963861 (+) True LOC110530684
TU850461 other upstream 429299 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 455886 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 455886 77353637 ~ 77356024 (+) False G749137
TU850224 other upstream 539250 77266652 ~ 77272660 (+) True G748959
TU850174 other upstream 631782 77179344 ~ 77180128 (+) True G748917
TU850834 other downstream 68317 77884237 ~ 77887356 (+) False LOC110530993
TU851066 other downstream 428290 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 981222 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 1163310 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1379350 79195270 ~ 79197378 (+) True G750935

Expression Profile