RNA id: XM_036986346.1


Basic Information

Item Value
RNA id XM_036986346.1
length 6431
RNA type mRNA
GC content 0.54
exon number 42
gene id LOC110530995
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78072559 ~ 78188049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGCGCTGGTGCTGAAACAAGATGGCTGTGCGCGCGAGAGGAGCGGAGGAGAGCTGAGGGAtgcagagacagcgagagagaccgcAAAGTGAGGGGAGCCTTTCAACAGCAAAATAAATAGCCATATTCGTGAAGAACGCACGGATTCCCTTGTAATTATGTCTTCGAATAGATTTTATGTCCACTATGGCAATATTTAGCTTATGTTTAGACGTACATCTGTAGCCTACACCGGGAGGTAACTGAGGAGTAGCCAAGCGAAGCAGTGAAGACCCAGCCGGCCGGTAGAGGACAGCCGGGGACGCTCAGCGCTGCTGTCAGAGATGTCCCTGCTCTGTGTCGGAGTGAAGAAAGCCAAGCTGGATGGAGCCCAAGagAAGTTCAACACGTATGTGACCCTGAAGGTGCAAAATGTGAAGAGCACGACCATCGCTGTCCGGGGAAGCCTGCCCAGCTGGGAGCAGGACTTCATGTTtgaGATTAACAGGCTGGACCTGGGGCTGACGGTGGAGATGTGGAATAAAGGCTTAATATGGGACACCATGGTTGGCACGGTGTGGATCCCCCTGCACAGCATCCGCCAATCAAACGAGGAGGGTCCGGGGGACTGGCTGACCCTGGACTCCCAGGTTATCATGGCGGACAACGATATCTGTGGAACCAAAGACCCCACTTTACACCAGGTGCTGCTGGACACACGCTTTGAACTGCCTCTcgATATCCCTGAAGAAGAGGCACGCTATTGGGCCAAAAAACTGGAGCAACTCAATGCCATGAGAGACCAGGATATAACTAACCAGGACTCGTACCAGGAAGACCCGGAGCGACCACTTCCTGTCCCAGGGACACAGTGCTGTAACTGGAGTCTGTGGGGAGAACAACAAAatgAGGACCCAGACAGTGCTGTGGATGACCGAGACAGTGACTACCGCAGTGAGACCAGTAACAGCATCCCTCCCCCCTACTATACCACGTCTCAGCCCAACGCCTCCGTCCACCAGTACCCCATCAGAGACCAGCAGCACCGCCAGGGGACCCGCCCCTCCTCCTACCCCCCTTCCAACAGCTGTGGCCCCCTCGACTACCACCAGAGGGCCATcagCCCTACGGGGAGCTATGCGTCGTCGGCAGAGTTGAGTCGCTGCAGCAGCCAGCTGAGTGAGGAGGAGTACGGCccagagtacagagagagggatcctTACGATGAGAACGACTCTTACCACTCCTGTCACTCCTCTGTCACCTACAGCAAGGGCTCTCCCGACTGGGACCCTGACGAGACCCAGGGGGGGTACAGCGATGAGGGGGGCTACAGTAAGGACGGGGGTGAGGAGGGGGCCCTCTATGAGGAGGATGACGGGGGCCTGTATGAGGAAGAGGGGACatatgaaggagaggagggcGAGATTTATGACGATGAGGATTACCCTCTGGACGGCACCCTCAGTGAGGATATGGAGGTCCCCTACACCCCTACCCCCACCAGCACGGCACCCCCCACACTCGACGTCCCCGGTGCTTCTAGACCCCCCCTGGAAAAACAGCCTTCTCTGCATCAACATCAGGCGCCACCCGTCCAGCCGCCCAGCCAAGCCCCAAATCAAGCCCACCCTCCGACCATGGCTCCAGGAGGACAGCCCCTGGGTCAGCCACCCACCCAGGCCCCTCAACCACAATCTCAGCCACAGCCAGTCCCCGGCCCAGCACCAGCCCAGTCCTTCTTCTCCATGGCAAAGCCCTTCTCAGCAGCAGTAACAGGCCTGGCCTCATCTTTTCTGTCTTCTGGACTCCCCACTGCCCAACCTGCCCAGCCTCACCCCCCAGGCCCACAACCCCAGGCTCACCCCCCAGGCTCACAACCCCAGCCCCAGTCTGCCTCCTCCATTCCCCCGTCTCACCCTGCCACCGGGGCCCCTTCCCCTCAGGGCACGCAGTCCACAACCACTGGCCCTCCCTCCCAGCCGACCCCCTCCACTGCCCCCCCCTCTCAGGCCCAGCCCCCTGCCCAAACAACTCCCCAATCAGAGGGCCCCAATTCCAAACCCCCCCTGCCGGAGGACCAACACCTTCTAGAGGAAAACGAACCCCTTCCACCCGAGGTTAGGATCCCCACCCCCATAGAGGAGGAACCCTCCATGGAAGACGAGGAGCTGAGGTTTGACGAGAGccgcccccccacccccataGAGGAGGTTGAGCCCATCCCTGAGagTGGTCCTGTAGATGAGGAGCCCAAGGAGCCGGTGGACCCGTCGCTGCGGGCTAGAGAGAACTGGCTACGAATCATCAACAGGGTCCAACAGCAGCTTCGGGAGgcacGAGGAGAGACATCCAATTCTTTGTGGTTTGGTAAAGGAGGGGTGGGAGAGGTTTTGTACAGCATCGACAGCATGCCTGATCTGCGCAAGAAGAAAGGCCCCTGCCTGGTCAAAGACCTGTTACAGGCCATGtctatGGCCTCTCAGAACGCTCGGAAGGCTGGGATCACCACAGCGATGGCATGCAGCACCCTCGGCAATGAGGACCTGAAAAGTCACGTTTATAAGAAGACCCTACAGGCTCTGATCTACCCCATCTCCTGCACCACGCCCCATAACTTTGAGGTGTGGACGGCCACCACTCCCACCTACTGCTATGAGTGTGAGGGGCTGCTGTGGGGCATCGCCCGCCAGGGCATGAGGTGCTCCGAGTGTGGGGTCAAATGTCACGACAAGTGTCAGGACCTGCTAAATGCCGACTGCCTGCAGAGGGCAGCGGAGAAGAGTTCTAAGCACGGGGCAGAGGACAGAACCCAGAACATCATCATGGTTCTAAAGGACAGAATGAAGATCAGAGAGAGGAACAAACCGGAAATCTTCGAGCTCATCCAGGAAGTGTTTACCGTCGTCAAGGCGACGCACGCCACGCAGATGAAGCAGATCAAACAGAGCGTGCTCGATGGGACGTCCAAGTGGTCGGCCATGATCAGCATGACTGTGCAGTGTGCTCAGGGCCTCCAGGCCAAGGACAAGACTGGTTCCAGTGACCCCTATGTCACAGTTCAGGTGGGCAAGACCAAGAAGAGGACCAAGACTATCTACGGCAACCTCAACCCTGTCTGGGAGGAGAACTTCCACTTTGAATGCCACAACTCGTCGGACCGTATTAAGGTACGCGTGTGGGATGAGGACGATGACATCAAGTCCAGGGTGAAGCAGAAGTTCAAACGGGAGTCAGATGACTTCCTGGGTCAGACCATCATCGAGGTCCGCACGCTCAGCGGAGAGATGGACGTCTGGTACAACCTGGacaagagaacagacaAGTCAGCTGTGTCTGGAGCCATCCGGATGCACATCAGTGTAGAGATCAAAGGAGAGGAGACTGTGGCTCCCTACCATGTCCAGTACACCTGTCTACATGAGCACCTGTTCCAGTACACTACAGAGGTGCAGAACAGTGGTGTGGTGAAGATCCCTGATGCTAAAGGAGACGACGCGTGGAAGGTGTACTTCGAGGAGACTCCCCAGGAGATCGTGGATGAGTTCGCCATGCGTTACGGAGTGGAGTCCATCTACCAGGCTATGACccACTTTGCCTGCCTGTCGTCTAAGTACATGTGCCCGGGCGTGCCCGCGGTGATGAGTACCCTGCTGGCCAACATCAATGCTTACTACGCCCACACCACCCAGTCCACCAATAACGTCTCGGCATCAGACCGCTTCGCCGCATCCAACTTTGGAAAGGACAGGTTTGTGAAACTCCTAGATCAGCTCCACAACTCCCTGAGGATTGACCTATCCATGTACCGGAATAACTTCCCAGCCAGTAGCCCTGAGAGGCTGCAGGACCTCAAATCTACTGTAGACCTACTGACCAGCATCACCTTCTTCAGGATGAAGGTCCAGGAGCTGCAGAGCCCCCCCAGGGCCAGTCAGGTGGTGAAGGACTGTGTTAAAGCCTGTCTCAACTCCACCTACGAATACATCTTCAACAACTGTCATGAACTCTACAGCAGAGAGTACCAGACAGACCCtgctaaGGCTGACGTTCCAGAAGAGCAGGGTCCCAGTATCAAGAACTTGGACTTCTGGTCAAAACTCATCACCCTCATCGTCTCCATCATAGAGGAAGACAAGAACTCCTATACACCCTGTCTCAACcaGTTTCCTCAGGAACTGAATGTGGGCGTGATCAGTGCAGAGGTCATGTGGAACATGTTTGCTCAAGATATGAGATATGCCATggaggAGCATGAGAAGAACCGGCTGTGTAAGAGTGCTGATTACATGAACCTGCACTTCAAGGTGAAGTGGCTCTACAACGAATACTGCAAAGAGCTGCCCACCTTCCAGAAACGTGTACCGGAGTACCCAGCGTGGTTCGAGCCGTTTGTCATCCAGTGGTTGGACGAGAACGAGGAAGTGTCCAGAGACTTCCTGCACGGTGCCCTAGTGAGGGACACAAAGGACGGGTTCCAGGTGACGTCAGAGCATGCTCTGTTCTCCTGTTCGGTGGTGGATGTGTTCTCTCAGCTCAACCAGAGCTTTGAGATCATACGCAAGTTAGAGTGTCCTGACCCCCAGATCGTAGGCAACTACATGAAGAGATTCGCCAAGaccatcGGGAACGTTCTGCTGTCCTATGCTGAGATCATTTCCAAAGAGTTCCCTAAACAATGTGggaacaaagagaaagagaaagtgCCCTGCATCATCATGAATAACATCCAACAGCTTAGAGTGCAGCTGGAGAAGATGTTTGAGGCCATGGGAGGCAAAAATCTGAACGTGGAGGCCAGTGACTTCCTGAAGGACCTGCAATTAAAGCTCAACAACGTCATGGACGACCTTAGTAGGATCTTTGCCgtcagTTTTCAGCCCCAGATTGAGGAAAATGTAAAGCAGATGGGAGACATCTTGGGCCAGGTGAAGGGACAGACTGTTACAGACAACAACAGCGTGGCCGGGGATGCAGACAACGTCCTGCAGCCCATCATGGACTTCCTCGACACCAATCTGTCGCTGTTTGCTAAGATCTGTGAGAAGACTGTGCTGAAGAGAGTGCTGAAGGAACTGTGGAAACTGGTCATTAACACTATGGAGAAAAGCATTGTGCTTCCCCCGTTCACAGACCAGTCgGGCACTCAGATGATCTTTAATGCAGCTAAGGAGTTGGGTCAGCTTTCTAAGCTCAAGGAGCACATTGTGAGAGAGGAGGCCAAGGCTCTCTCCCCTAAACAGTGTGCCATCATAGAGCTGGCATTGGACACCATTAAGCAATACTTCCATGCGGGTGGTGTGGGTCTGAAGAAGACATTCCTGGAGAAGAGTCCTGACCTGAAGTCTCTGCACTACGCCCTGTCCCTCTACACACAACACACTGACAAGCTCATCAGGAAGTTTGTCCTTTCACAAAACGCTCAGGtCCATGGAGGGAAGGGGGTCAGGTATACCCTCAACGAAGACACATTGCCAGAAAAGGGGTCGGGAGTGGAGGAGCCAATCGGAGAGGTGGTAATGCACGTGGAGATCTACACCCATCCCAACACTGGAGAACACAAGATCACtgtgagagtgaTTGCTGCTAATGACATTAAGTGGCAGACCCAGGGGATATTTCGTCCCTTCGTGGAGGTCTACATCATTGGTCCCCACCTCACTGACAAAAAGAGGAAGCACGCCACCAAGTCCAAGAATAACAGCTGGTCGCCCAAGTTCAACGAGACCTTCCAGTATTCCTTGGGCAGTGAGTTGGGTCCAGAGGGCTAtgagctgcaggtgtgtgtgaaggactACTGCTTCGCCAGGGAGGACCGTACAGTGGGCATGGCCCTGATGCAGTTGAAGGACATGGCCTCCCGGGGCAGCATGACATGCTGGCTCCCCCTGGGGAAGAGGGTCCACATGGACGAGACGGGCCTGACGGTACTGAGGATCCTGTCCCAACGCAACAACGACGACGTGGCCAAAGAGTTTGTCAAGCTCAAGTCAGACCAGCGCTCTGCCGAGGAGGGACGGGCGAgctgagagggagagtagagatggGCCTAGTGATCAAGATACTGATTtagatatacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttactaaTACAATACTGGCATGTTTATGTCATATAAACACAGTCATGAACACACTAATCATCTCTAATCACATAATGATTATCAAATGTACACAAACACAGAGGTGACCAACAGTTCCTTTGAGCACCTGTCAATGAACCAATCAATTTATCAATCCATTTCTACTGCTCTGgctctcattatctctctttcactcttgcATATtacacattttatatatatatttaatgcaGAAATGTGAGAAATAAATATCACCTGATGAGTTATGGTGGA

Function

GO: NA

KEGG:

id description
K15293 UNC13A_B_C, MUNC13; protein unc-13 A/B/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850945 lncRNA upstream 50746 78021343 ~ 78021813 (+) True G749557
TU850935 lncRNA upstream 73606 77998733 ~ 77998953 (+) True G749547
TU850923 lncRNA upstream 118578 77953768 ~ 77953981 (+) True G749536
TU850922 lncRNA upstream 119951 77952395 ~ 77952608 (+) True G749535
TU850918 lncRNA upstream 123939 77948322 ~ 77948620 (+) True G749531
TU850977 lncRNA downstream 1799 78189848 ~ 78191947 (+) True G749585
TU850980 lncRNA downstream 5620 78193669 ~ 78200686 (+) True G749588
TU851055 lncRNA downstream 36505 78224554 ~ 78224777 (+) True G749654
TU851056 lncRNA downstream 38405 78226454 ~ 78226721 (+) True G749655
TU851059 lncRNA downstream 41386 78229435 ~ 78233263 (+) True G749657
XM_021613929.2 mRNA upstream 25785 78038094 ~ 78046774 (+) True LOC110530688
XM_021613927.2 mRNA upstream 94767 77973674 ~ 77977792 (+) False LOC110530687
XM_021613928.2 mRNA upstream 94767 77973674 ~ 77977792 (+) True LOC110530687
XM_036986342.1 mRNA upstream 108698 77954717 ~ 77963861 (+) False LOC110530684
XM_036986357.1 mRNA downstream 147852 78335901 ~ 78361471 (+) True onecut3b
XM_036986358.1 mRNA downstream 404249 78592298 ~ 78597767 (+) False LOC110530701
XM_036986359.1 mRNA downstream 404250 78592299 ~ 78597767 (+) False LOC110530701
XM_036986360.1 mRNA downstream 404250 78592299 ~ 78597767 (+) False LOC110530701
XM_036986361.1 mRNA downstream 404250 78592299 ~ 78597767 (+) True LOC110530701
TU850834 other upstream 185203 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 689948 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 716535 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 716535 77353637 ~ 77356024 (+) False G749137
TU850224 other upstream 799899 77266652 ~ 77272660 (+) True G748959
TU851066 other downstream 56161 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 609093 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 791181 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1007221 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 1157388 79345437 ~ 79347448 (+) True ncana

Expression Profile