RNA id: TCONS_00036797


Basic Information

Item Value
RNA id TCONS_00036797
length 750
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_017909
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7951782 ~ 7953182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaagacgtagcctttgcctgtgtgcgcactggtgttggagagaataaagttgttctatgtgtagcccgcagtCTATGTATTAATAGTGAAAGAAAGCTgggaggtgggaaagggccgtcatcgcagcttgctcttatggtttatatgctttatgaagtcctccaccattcagaggaatttgtgagtacgagagagatctcaggacTGGTCTTCTAAAAATAAACCCACCATAAAAATGATTCACTGCATGGCGGCAAAAGTGTGTCAACAAGCTTCAATCTGCTTTAACAAGATCAAAGGGTTAGTCATGGACAGAGAAATGAGTTACTGATGTCTGACGTACAACACAGTTTTCATGGTAACTCCATTATGAAAGGTGACAATGTTTCCAGACACTAATCCACACACAACTGCATTTACCGTtagatagtttttatttttttttgcttccaaGGCTCATGTGTAGGTGGCTCTTACTGGAATTAATCAAACTCTGATTTCTAAAGGATTATCCAGCAGCTCAagtgatttttttacagtattaaaacAATAACCCAGAATTTCCGGTTGGCTTTAAACATAATAAGAAAGCAATCCATAGAACATCCttttaattgtaaaatacagGATTGGCCCATTTTAGGCTGCACTCGTttttatgtttgatttattttgttgtcaTGTTGAGTCTTATTTGGAAGTTTGCCGGAAAAGTGTGTTTCCTTATCAGATATTCTATTAAAAATAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036796 lncRNA downstream 313130 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 740586 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036448 lncRNA downstream 812640 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 1471269 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00036794 lncRNA downstream 1737025 6212846 ~ 6214757 (-) True XLOC_017891
TCONS_00035342 lncRNA upstream 169511 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00035348 lncRNA upstream 841320 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 2123975 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 2160846 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 2394601 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035334 mRNA downstream 303457 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035331 mRNA downstream 368296 7478104 ~ 7583486 (-) False XLOC_017906
TCONS_00035330 mRNA downstream 368846 7443224 ~ 7582936 (-) False XLOC_017906
TCONS_00035332 mRNA downstream 404702 7543597 ~ 7547080 (-) True XLOC_017906
TCONS_00035329 mRNA downstream 657945 7262434 ~ 7293837 (-) True XLOC_017905
TCONS_00035335 mRNA upstream 11174 7964356 ~ 8024582 (-) False XLOC_017910
TCONS_00035336 mRNA upstream 12033 7965215 ~ 7992496 (-) False XLOC_017910
TCONS_00035338 mRNA upstream 128527 8081709 ~ 8094718 (-) True XLOC_017911
TCONS_00035339 mRNA upstream 147888 8101070 ~ 8110672 (-) True XLOC_017912
TCONS_00035341 mRNA upstream 169521 8122703 ~ 8419057 (-) False XLOC_017913
TCONS_00035333 other downstream 322511 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 880171 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 1139102 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 1368112 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035301 other downstream 1956079 5995589 ~ 5995703 (-) True XLOC_017886
TCONS_00035337 other upstream 33768 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035340 other upstream 169511 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035349 other upstream 983721 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 1690883 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 1799349 9752531 ~ 9760424 (-) False XLOC_017923

Expression Profile

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