RNA id: TU851981


Basic Information

Item Value
RNA id TU851981
length 3379
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110530703
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78626521 ~ 78636077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATAATGTACTGCACACAACAAGTCCGACCCCTTTTCTCTTCCTAGGCCTCTGGTAGGCTAGGGTCCTTTCACATACCCAAGGCCGGGTCGTCAAGCCGATAGAGGAGTCTTCTTCCACTGCCTCACCGCCCATCATAACCAGTGTGACATCACAAGGTCACACCCCCATACCCATATTGGTGCTTTCCccggaagaggaagaagaggactcTGGAACTTTCCCCCAAGTGATTCTGTTTTTTGACAGACACTGTGTGCATAACTGCCAAATACGAAGTTTGTCCTTTTATTGaatgtttatttattgtttttcttttctttttaacATCGTTATCACGTGTCGTCGCCAGTCTGCTTCTGCAGCCTATGTTTGGTTTTTGTTTTCTGTGTGTTAATTTTTTCTGTGTCAGACTTTATGAAGAGCCTGATGCTTTTGTGTTTGTGCCtgccttaaagggatagttcacgtCTAAAATCAAACTCATGTTTTCACCATTGAAGGTATGGAAATGTATGACATGCTTTGACTTCAGGGTGAGCTGTCCTGTACCTGCTTGTAAACTAGTGATGGTTAACCCTAGGGCTTGAGAGGTGGGAGCTCACAGGTTTTTTGCATGTTGTAGACCATTGTAATTTATTCACCCTGTAAAAACACCTTTTTAAGTTCATTTGAAGTGTGATGATGCGTGATAATAATAATGGTGGAAAtcttatgttttttttaattagaaAAAAATCTGCAATTGTAATTTGAGCAGTGGCCGCAAACAAACTACATATACTCACTTACAGTTATTACCTGTAAATACTCACTTACAGTTATTACCTGTAAATACTCACTTACAGTTATTATCTGTAAATTGTATTGTTTTGGCAGTTGTCTTTTCATTTTTAACCAGTTTCTATCTtaacctacatttacctagacacaTTTCACATTATTGCTGTCTTGAGTTACAATTTCACTCAGTCTTATAATGGGCTAGTAGCATTCAAAACAGATGTAAATAACGAGGCATAACCTTTGCATTGAGACTTATACAAGAAAGAAAAAACTGATGTCAAAAGTACCATTTTTAATCTTAATCAGGGTAACTTTTTTTCCTGGGTGTAGCAGGAACTGAAAGTCACTGTAAAGAAAAAAGGAAAGCTGTTGATGGCCTCTTAAAGGCATTACTAGTgcattgtgctgtgtgtgtctgtggtaaaaaaaaaatggggaaaatatatatatttagtccATGGCACTTATCTTTTTCCTCAGCTTATGTTTTGCTCTTGACTCTAAGCAGATGTGAAAATATCTCATTTTGTCTTAATTCATTTAAAAGAAATGTTTAGGCTGATTTTTCTAGTGATTATTTTTCATTTTCTCAGTTTGGATGTGGTGTTGGTGTGACCTGGTGTGCCATCTTTGAATGAGTGGTATTTATTTGAGCTGTGTAAAAGTGTCCAGTAGTACACCCATAGCTTGTTCTGAGAGTTGAATATTATCTGAGAAAGGTGGAACGCTGATCTGTTCGGTGTATATACTAGCTCCAGTCCTAAATAAGCATTTGTACTCCTTTTATGCCACTTagaaacaaataaaaacaaagaATGCTGCCAACTTGAAATGCCTAAAGAATGTTATGAATTTCTGTACTGAGAGaaactgaattttttttttttaagagaaaAAAAAGTGATTGTATATAAGGTTTTCGAGTACGTTTTTATCATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTGTCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTGTCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTCTATGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATGATCAACTGTCTATGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCATCAACTGTGTCTGAATGGGAATATGGAGCATGTGTAATTGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCATTTTTATCATCAACTGCGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGTTTGTATCATCAACTGTCTATGAATGGGAATGTGGAGCATGTGTAATTGTTTGTGTGATCAACTGTGTCTGAATGGGAATGTGGAGCATGTGTAATCGGCAGAACATGTGGAATAATCCCTCAAGACATACATCACTATTGCTAAAGAGCTTTGATTGCTGTGTGTGATGAAGAATATCGTACTATGAACTGAAGCCCTCTGTTAGATGGCTCTTGTAGCTGTCCCAATGCAAAGGAATGACCAGAGGACATTGTCTCCTACAGCAGCATCCTCATCCACACCCCTGTTCCATTTCCGCACCAAGATCAGGCTGTAGTTTGTGCAGGTTTTTGCTGCTATTTGATTCAAAATAATCATTTGAATGTACAGCCTGGTCTTATAGACTAGTAAATGTAAATCTAGGACATTAGTAGGCCTTACGTAAGACAGAAGGTCACTTAGGTCAAAAATGAAAGTAGGGTGGTCGTATAAtgcgaatgtctagcaacccaaaggttgtgtgtttgaatctcatcatggacaattttagctaattagaaaatgtgcaactacttagcatgatAGCTAACCTTAAAgctttaaccttttatttaacagttaagaacaaaatcttattttcaatgacagcctaggaacagtgggttaactgcccgttcaggggcagaacgaggatttgaacttgcaaccttccggttattagtccaacactctaaccactaggctaccctgactcTTAACCCTAACCGCTAGCTGacgtgttgtggttgcaggttcacctgcATCATCAAAAGCCTATTATTTtagggtgttgctataggccaccaagtgctaacagtcagtatctacactgaacaaaaatataaacgcaacatgtaaagtattggtcccatgtttcatgagctgaaataaaacatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU851943 lncRNA upstream 48661 78583586 ~ 78583799 (+) True G750426
TU851916 lncRNA upstream 74837 78557346 ~ 78557623 (+) True G750399
TU851259 lncRNA upstream 103777 78528427 ~ 78528683 (+) True G749834
TU851238 lncRNA upstream 132657 78492761 ~ 78499803 (+) False G749814
TU851994 lncRNA downstream 9035 78645112 ~ 78645675 (+) True G750463
TU852005 lncRNA downstream 28001 78664078 ~ 78664307 (+) True G750474
TU852025 lncRNA downstream 63753 78699830 ~ 78715194 (+) True G750492
TU852024 lncRNA downstream 79192 78715269 ~ 78715534 (+) True G750491
TU852030 lncRNA downstream 80448 78716525 ~ 78716813 (+) True G750497
XM_021613948.2 mRNA upstream 22215 78607413 ~ 78610245 (+) True plekhj1
XM_036986358.1 mRNA upstream 34693 78592298 ~ 78597767 (+) False LOC110530701
XM_021613951.2 mRNA downstream 180043 78816120 ~ 78824322 (+) True LOC110530704
XM_036986367.1 mRNA downstream 194608 78830685 ~ 78861909 (+) True LOC110530706
XM_021613956.2 mRNA downstream 258514 78894591 ~ 78902977 (+) False LOC110530707
XM_021613959.2 mRNA downstream 258527 78894604 ~ 78902977 (+) False LOC110530707
XM_021613955.2 mRNA downstream 258694 78894771 ~ 78902977 (+) False LOC110530707
TU851066 other upstream 386845 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 745104 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1249849 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 1276436 77302737 ~ 77356024 (+) False G749137
TU852066 other downstream 161065 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 343153 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 559193 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 709360 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 912420 79548497 ~ 79569877 (+) True LOC110530726

Expression Profile