RNA id: XM_021613957.2


Basic Information

Item Value
RNA id XM_021613957.2
length 1774
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110530707
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78894591 ~ 78902977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGATAGGACCATGCGGTCCAACACTAGGCACTCACAATTGATTGGCTAGTGAGGACAGTGGGAGGATTTAACAGTCATCAAATAGAGACGCTTTTACGCATTGAACAGTTCAATGTGTAGGTTTGAGTCTGAGGAAGACAGGGTAGCCAAGAAGAGGCACTATAGGGCAGTCTATTGTGATTATCTATCTTCAGTTATCACTCAGTTACATATTTGGAACACACAGTTCAACTCATAGGCTACTGTACTTGGCTCCATTGATCAATAAAGACAAAGAACATCTAATTATTTATATTTCGTCTTCTGGAAAACGGCAGAAGAGTATCGGAGTTGTGTGGGTCAGTTCCAAATAACCTACATTTAGACAAGCGGATACCAGCTACTCTTTGATACTCCGACCCAAATAACGTGCCAAATAAAGCGCGGCCCAGCGAATGGACCATCATCAACCCGGCACACGTAGCTTTATTCCCCGTGCGGCTCTAGTCTGCGCGTCGGTACCTACTGAATCATTCATGCGCTTGTCCATCAGCTCGACCACAGGCAGTCGCTTCGAGCTCTCTGTCCATCGGGGAGAGACGGTGGAGGTGCTGAGGAGACGACTTTCCCAAAAGCTCAGAGTACCGAAAGAAAGATTCGTCTTGCTGCATAAGGAAACGCGGTTGAGTACAGGGAAACTACATGACCTGGGCATAGTTGATGGGAGTAAGCTGACACTGGTCCCAACTATTGAGGCAGGCTTGTTATCATCCCAACCATCCAGAAGAGAGCAGACCATCATGCAGGCTTTGGAGAGTTTAACTGAAACTCAGGTCAGTGACTTCCTGTCTGGCCGTTCACCCCTGACCCTTGCCCTCAGGGTCGGTGATCACATGATGTTCGTCCAGCTCCAACTGGCCCCCCAGAGTGCCGCTGGGCAGCAGCAGAGTCACCTCATCACCCAGCGAGCAGGCAGAGCTGGGGTTGAACAGGGTGACTGCAGTGTGGCTGGTACTCCCACCTCTAATAAAACAGCTGCCGGGGAACCAGGTGCTGTCATAGAGAGCTTTGTGAGCCATGCCCCAGGAGTCTTCTCCGGGACCTTCTCAGGCACTCTGCCCCCAGCTGGGCAGGACAGCACCAGTACCGGTGTCAAGTCATCCAGACGAGGCATCAACACCATCTTCCAGATCCTCAACGACCTTCTCAGTGCCACTCGCCACTACCAAGGGGCTCCACTGTCCCTCTCCCAGCTCCTCTGCCGCCCTCCCAGCACCCCAACCAGCAGCACTCCGAGTACCCCAACCTCGCCCTTCCCGCCGCCCTCACCTCTCACCCCTGACCTTGTCAGCACTGCTACCTCAGGACCACTTACAGACCACATCAGCCAGGAACAAAGTCACTCATGTAAACCTACTGcaGGCCTGTGTTCCAGTCAATCTGAGGAAGAGAACCAGTCATTGCGTTGTAAACTGGAGCGCCTTCAGATGTTGATGCACCAGAGACGCCTGCGCAGGCGGGCTCGCAGGGACACACGCACCTCACACCCCTACCCTCCTCACCGTCAACCCTGGTCGCCCGGACGAGACAAAGCCAGCCGCCATAGCAACGGCAGCCTGTCCAGCAGCGAGGGCTCTTCCCTGGACGACCTGGAGTTGCAATGGAAACCGGAGCTACCCTCCGACCTTGTGATGGCATAGAGAGAGATTAAAATAAGTTTGGACCTATGTCATTGGCTGTCCTTTGAATGGCTGAGTAGGAGAAATAAACTGCCCATTTTGGGACTCACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852318 lncRNA upstream 1659 78892853 ~ 78893122 (+) True G750741
TU852306 lncRNA upstream 21437 78872966 ~ 78873344 (+) True G750731
TU852058 lncRNA upstream 108863 78785677 ~ 78785918 (+) True G750525
TU852056 lncRNA upstream 113765 78780765 ~ 78781016 (+) True G750523
TU852054 lncRNA upstream 115748 78778787 ~ 78779033 (+) True G750521
TU852339 lncRNA downstream 20317 78923294 ~ 78923524 (+) True G750759
TU852350 lncRNA downstream 29285 78932262 ~ 78932476 (+) True G750770
TU852440 lncRNA downstream 60369 78963346 ~ 78963575 (+) True G750840
TU852443 lncRNA downstream 63781 78966758 ~ 78967066 (+) True G750843
TU852496 lncRNA downstream 214778 79117755 ~ 79121181 (+) True G750892
XM_036986367.1 mRNA upstream 32872 78830685 ~ 78861909 (+) True LOC110530706
XM_021613951.2 mRNA upstream 70459 78816120 ~ 78824322 (+) True LOC110530704
XM_021613950.2 mRNA upstream 260703 78626521 ~ 78634078 (+) False LOC110530703
XM_021613948.2 mRNA upstream 284536 78607413 ~ 78610245 (+) True plekhj1
XM_036986361.1 mRNA upstream 297014 78592299 ~ 78597767 (+) True LOC110530701
XM_036986371.1 mRNA downstream 36203 78939180 ~ 78952258 (+) True LOC110530709
XM_036986372.1 mRNA downstream 53258 78956235 ~ 78959026 (+) True LOC110531004
XM_021613961.2 mRNA downstream 84238 78987215 ~ 78990699 (+) False LOC110530711
XM_021613963.2 mRNA downstream 84238 78987215 ~ 78990699 (+) False LOC110530711
XM_021613966.2 mRNA downstream 84238 78987215 ~ 78990699 (+) False LOC110530711
TU852066 other upstream 97233 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 649166 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 1007425 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1512170 77353637 ~ 77382611 (+) False G749137
TU850453 other upstream 1538757 77353637 ~ 77356024 (+) False G749137
TU852454 other downstream 76253 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 292293 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 442460 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 645520 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1728333 80631310 ~ 80634052 (+) True G752357

Expression Profile