RNA id: XM_036986371.1


Basic Information

Item Value
RNA id XM_036986371.1
length 5562
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110530709
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78939180 ~ 78952258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggactgatttccttatatgaactttaactcagtaaaatcattgaaattgttgcgtttatatttttgtccagtataATAATTGCATGATCCGCCTTCATCCCTTTTCAAAGGTTGTGGGAAAACGATTTAGGTACAGAATTTGATAAGGAGGTATGGCTGAAGATCTGGCATTACCTACTTACTAGTCCAAATATTAAGAAGACTAAACTACAAATTCATAAATACCCCTGTTAAATTAAACTGTATGTTCCCGGACACTTCACCAAATTGCCCGAAATGTAGGACCGAGAAAGGAACTTTTTTGCACCTATTCTGGCACTGCAATAAGCTAATGAAATGCATAATTACGGATATGAAgatcattctcttcatggtgatgtgtcCTGAATAGGTCcacaaaggtagaaatatgcaCTATCCTTCTTTTGGATATGAAgatcattctcttcatggtgatgtgtcCTGAATAGGTCcacaaaggtagaaatatgcaCTATCCTTCTTTTGGATATGAatatcattctcttcatggtgatgtgtcCTGAATAGGTCcacaaaggtagaaatatgcaCTATCCTTCTTTTGCATATGTGGGTATTATTCTAAACACTGGCTATTAATTCTTATGAGCTCTGTCCCCCAAAAGAGACCAAATTTGATTGGGCCGGACCAgatcaaatctgaaccaatcatagacgccGATGTTTCACAAGTTTAGACAGCACAGTCATCTACAGTACAGCACAAACTTGTGAAACAGATATTTTGAAAAACAGGGTCGCATAAAAAACAGAGGGAGATTTTACTATAGTTCTGTtgccaaactttgcatctgcacagttcttccagtaaatgtgtttttgtgaaatGATCTGTGTAAGTTAttcaaagtagtccttgtgcgtAGAGTTGtaatggtttgttaaactttgaaattaatggtttttgtttggcgtCCATTTTAAAGAGAAAAATCTTAGTCAAAAGCATAAATCCGTTACCTTGGAAATGCCTAACTGCAGGTTCTCGGTTTaagggaccacaatggaaataagtcacTTACTTTGTGTAAAATATGTgaaatgtgtgtatatacatttttaacttcaaataaaatcaatcaatcaatgaaccTTCATAGCCCTAGCACTTGTGGAATATGTAGGTATTGGATGGGTTTAAAGCAATATGGTGAAAGCTTAACAGGGCTGCAATCATTGTTTATACCTATCCAATCATTCAGATGTACCTGAAGGGCATAAGAAGTGTAATGGAGAAATGTAAGATCATATTCATATTTAAATTCATATTTAAATTGCATGTGACTGACAATGTATAACATATTCAGAGTCTCTGTAACCTACATGATTCACATACAGTACTTATCAACTCTGTAGTCTCCAGACAGACACTCAAGGTGTCGACTGAATATTTGGAATGGTTTTACATGTCTCTTGTTCGCTGATAATAGTAATTGACGTCAGCTAATCGCTGAAGGTCCTAGTACAAGGACCGAGGACACAGAGGAACACGTACACACATAGCGATGTATTACATCATATAGCTCAGGGTATATAAGCTGTGTTCTTCCTAATGGAGGTTGAACAATTTTTCTGCTTTGAAGCTGATTTTTGTTCCCTTGTTGCGATCAATTTTTGCAACTGGAATTGTATTCTTATATCCACTGGGACTACTAGTGGTTATTTCAGGATATGGCCAGTGACTCTAGTCTAACCAATAAGGTGCTGACTATTTAATTGCACAGGGTTAGAAAGGGATTGATTTTGATTACAGTGTCAGTTTCTAGCATTTTATTATACTCAATCAGGTATATATATCTGCATTAGGCAGAAcaggctgtaaaggacagtattgCAGATACATGTCTTATTGAAGAAAGATACTTAGCTTATATCTTATTGAGCAGGTATGGCAGTGAGGTGGTGTTCCTATAGGTTTGTTATGTTGGTAGTGTTTGCATGTTATGCTGATGCACAGCCCAACTGGTGGTTTCCTCCAACCAACAACCCCCAACCTCAAGTTAAGCCTAAGCAGCCCCAATGGCCAGAGCCCCAGTGGCCACAGCAGCAAACTCCCCAGAAACCACAACAGCGGACTCCCCAGAGGCCAGAGTCCCAGGGGCCACAGCTGCAGACTCCCCAGGGGCCACATCAGCAAACTCCCCAGAGGCCAGAGCCCCAGGGGCCACATCAGCAAACTCCCCAGAGGCCAGAGCCCCAGAGGCCACAACAGCAGACTCCTCAGAGACCAGAGTCCAAGGGGCCACAGCAGCAAACTCCCCAGAGACCCGAGCCCCAGTGGCCACAGCCCCATGGACCACAGCTGCAGACTCCTCAGTGGCCACAGCTGCAGACTCCTCAGTGGCCTCATCTGCAGAATCCCCAGAGACCAGAGCCCCAGGGGCCACAGCTACAGACTCCCCAGAGACCAGAGCCCCAGGGGCCACAGCCGCAGACTCCCCAGAGACCAGAGCCCCAGGGGCCACAGCCGCAGACTCCCCAGAGACCAGAGCCCCAGTGGCCACAGCTGCAGACTCCCCAGTGGCCACAGCTGCAGACTCCCCAGTGGCCACAGCTGCAGACTCCCCAGTGGCCACAGCTGCAAACTCCCCAGTGGCCACAGCTACAGACTCCCCAGAGACCAGAGCCCCAGGGGCCACAGCCGCAGACTCCCCAGAGACCAGAGCCCCAGGGGCCACAGCTGCAGACTCCCCAGAGACCAGAGCTCCAGGGGCCACAGCTGCAGGGGCCACAGCTGCTGACTCCCCAGAGACCAGAGCCCCAGGGGCCACAGCTGCTGACTCCCCAGAGACCAGAGACACAGGGGCCACAGCTGCAGGCTCCCCAGGGGCCACAGCTACAGACTCCCCAGGCACCGGCACCCCAGGGGCCACAGCTGCAGACTCCCCAGAGACCAGCGCCCCAGGGGCCACAGCTGCAGGCTCACCAGGGACCAGAGCCCCAGGGGCCACAGCTGCAGGCTCCCCAGGGGCCACAGCTACAGACTCCCCAGGGGCCGGCACCCCAGGGGCCACAACTGCAGACTCCCCAGAGACCAGCGCCCCAGGGGCCACAGCTGCAGGCTCCCCAGGGACCAGAGCCCCAGGGGACACAGCTGCAGGCTCCCCAGGCTCCTCAGAGGCCACAGCTACAGACTCCCCAGAGACCAGCGCCCCAGGGGCCACAGCAGCAGACTCCCCAAAGACCAGAGACCCAGGGGCCACAGCAGCAAACCACCCAGAGACCAGAGCCCCAGCACCAAACTACCCAGAGGCCAGAGCCTCAGGGACCACAGCAGCAAACCACCCAGAGACCAGAGCCCCAGTGGCCACAGCTACAGACTCCCCAGGCGCCACAGCTACAGACTCCCCAGGAGCCACAGCTACAGACTCCCCAGGAGCCACAGCTACAGACTCCCCAGGCGCCACAGCTACAGACTCCCCAGGCGCCACAGCTACAGACTCCCCAGGCGCCACAGCTACAGACTCCCCAGGCGCCACAGCTACAGACTCCCCAGGCGCCACAGCTGCAGACTCCCCAGGGCCCGGCGCAGCAGCTGCAAACTCCCCAAGGTCCACAGCTACAGACTCCCCAGGCACCACAGCTGCAGACTCCCCAGTGGCCAGCAGTAACTAAAATTCAAAATCCGAGATGCCAAGTCGAGTCTAAGGATACAGTGCAATGTGGAACCCCTAAAATTACTTTGGCTCAATGTGAGGCTATCGACTGCTGCTTCAATGGACAGCAGTGCTACTATGGGAAGGCAGTGACTGTGCAGTGTACCATGGATGCtcagtttgtggtggtggtggccaGGAATGCCACTTGGCCCAAAATAGACATTGATACCATCATTCTGCTGGGGGGAAACAACGGCCCCTGCAGTCCTGTTGGCATCACTTCAGCCTTTGCCATATACCAGTTCCCTGTCACAGCCTGTGGAACCACTCTGAAGGAGGAAAATGGTTATATGGTTTATGAGAACAGGATGGTGTCTTCCTATGAAGTGGGGGTCGTACCCCAAGGCGCCATCACCAGAGACAGCCAATTTGAGCTGCTGTTTCAGTGTAAGTACTCCAATACTGCGGTGAAGGCTCTGGTTATTGAGGTGAACAGTGTTCCTGCACCTGCTCCGGTTGCTGTTATGGGACCGCTCAGATTGGAACTCAGACTGGCCAAAGGAACTTGTGACACCAAGACATGTAAAGATGAGTCCAGTGCCTTCACATCGTTTTACACTGAGGAAGACTACCCTCTCACTAAAGTCCTGAGACAACCTGTATACGTTGAGGTGCGCCTCCTGGAGAAGAAGGATCCCAACCTGGTCCTATTGCTGGAGCGCTGCTGGACCACCTCTGACCCCAGCCTTGTCAGCATGCCCCAGTGGGACCTCCTCATTGAAAAatgTTCCTACCAGAATGATAAGTACCAGACCACCATGGTCCCTGTGGAACTCTCCTCTGGCCTTCTGTACCCCAGCCACTACAAACGCTTCATCCTCAAGATGTTTACCTTTGTGGATCACACTCTGGCTCCCCGCAAAGATACAATTTTCATCCACTGTAGTGGATCTTTGTGCTACCCTACTCCATGGGACTCCTGTGAACCAAAATGCAACAAACAAAGAAGAGATGTTGCTTGGAGGAAGACTAGGCAAACTGCTGTGGTCTCCAGTGGAGAAGTGGTCCTGGTTGACAAAAAGCCAGCCTAGCCTTCAAACTACTGATACTAGCTACAGTTTGTAGCAGGATATGAAATGATGTACTCCGTCCTTCCATACCCATTACAGTGTAGGTATTGAAAAGCACTGGCAGTACTTTTTCTACGAACCTTTTACCTGGCGATTGTTTCTAATTTCTTAATACGGAAGAAACGTGTCTCTTATAAACGTCATTGTCCAGTTGCAGGTGGTACTCCAAAAATGAGACTATTCAGAAGATATTAAATCCACTTTTTGCACCGAGTGAGGAGTTCACTCGCCTTTCCCAACATATTGCAGGGACTCTTTTCTATGCGACACGGTTCAGCAACGCGTAGAAGTAGACAGCGCATCACACAGTGCGACCAAAACAAAGTTCTATACACATGCAAGAGGAATTTGTCATTAGATACAAACAGTGGATTTAATATTGTTCTGAATATTCTTGGTTTTTTGGAGTTCCATCTGCAACTGGACAAATTAGTTTATAAGACTCTGGAACTTTCTGAATCGAGAATGAAGAATGTACCGCAAAGTAAAGGTTTGTCTAAAATATCCTGATTACGGCTAAACAGCAGTTTAGGTATGACATCAGACACAAGCTTTAGCTCTGCCGCTAAATTTCGTGTTTACATGGCTATGATAAAACATGAGTTCCTGATTTCGCAACGTATTCGTTTCTAATAAACAGTTGTACCCCCCAAATGATATTGACTTATTTGTGGATATTAAAACCTACTCTTACCACATAAATGTGGATATAGGATCTGTAAATCTAGTCAGGTTTGTTAAGTAAAGGCATTGTCTTATTCCTGGAATCATTGAAAGCAGTGGTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852350 lncRNA upstream 6704 78932262 ~ 78932476 (+) True G750770
TU852339 lncRNA upstream 15656 78923294 ~ 78923524 (+) True G750759
TU852318 lncRNA upstream 46058 78892853 ~ 78893122 (+) True G750741
TU852306 lncRNA upstream 65836 78872966 ~ 78873344 (+) True G750731
TU852058 lncRNA upstream 153262 78785677 ~ 78785918 (+) True G750525
TU852440 lncRNA downstream 11088 78963346 ~ 78963575 (+) True G750840
TU852443 lncRNA downstream 14500 78966758 ~ 78967066 (+) True G750843
TU852496 lncRNA downstream 165497 79117755 ~ 79121181 (+) True G750892
TU852541 lncRNA downstream 215876 79168134 ~ 79169700 (+) False G750923
TU852543 lncRNA downstream 215876 79168134 ~ 79170910 (+) True G750923
XM_021613956.2 mRNA upstream 36203 78894591 ~ 78902977 (+) False LOC110530707
XM_021613959.2 mRNA upstream 36203 78894604 ~ 78902977 (+) False LOC110530707
XM_021613955.2 mRNA upstream 36203 78894771 ~ 78902977 (+) False LOC110530707
XM_021613957.2 mRNA upstream 36203 78894781 ~ 78902977 (+) True LOC110530707
XM_036986367.1 mRNA upstream 77271 78830685 ~ 78861909 (+) True LOC110530706
XM_036986372.1 mRNA downstream 3977 78956235 ~ 78959026 (+) True LOC110531004
XM_021613961.2 mRNA downstream 34957 78987215 ~ 78990699 (+) False LOC110530711
XM_021613963.2 mRNA downstream 34957 78987215 ~ 78990699 (+) False LOC110530711
XM_021613966.2 mRNA downstream 34957 78987215 ~ 78990699 (+) False LOC110530711
XR_002474584.2 mRNA downstream 34957 78987215 ~ 78990699 (+) False LOC110530711
TU852066 other upstream 141632 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 693565 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 1051824 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1556569 77353637 ~ 77382611 (+) False G749137
TU850453 other upstream 1583156 77353637 ~ 77356024 (+) False G749137
TU852454 other downstream 26972 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 243012 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 393179 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 596239 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1679052 80631310 ~ 80634052 (+) True G752357

Expression Profile