RNA id: XM_021613961.2


Basic Information

Item Value
RNA id XM_021613961.2
length 1720
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110530711
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78987215 ~ 78992144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaagtCATTTAAATACTTCGCTAACAGTCGTCATAGACAGAGTGCGCTTCCATTTCTTTTGTGACGACGTGCCTCTCTAAACACCAGCTCTTCTCGTTCTGTCCGTAAAAGACAAAGAAACATGTCCGACGAAGGAAAACTTTTCGTCGGTGGCCTGAGCTTCGACACAACAGAAGAATCTCTGGCTGAAGCTTTCGCTAAGTATGGAAACATAGCAAAAGTTGATGTCATCAGGGACAAAGAAACGGGAAGATCTCGTGGATTCGGCTTCGTAAAGTACGATAATGCCGAGGATGCAAAGGATGCATTGGATGGCATGAACGGCAAGTCAGTTGACGGCAGAACAATTCGTGTGGACGAGGCAGGCAAGGGTGGTGGTCGTTCTGGAGGCGGAGGTGGTGGATTCAGAGGGTCCAGAGGCGGTGGTGGATATGGCGGTGGAGGTGGatatggaggggggagaggaagaggtgggcGAGTTTACTCGCGAGGTGGTGGAGGATATGGTGGTGGTGACAGGGGATATGGTGAGAGGAGCTATGGAGGTGGCGGCGGAGACCGGAGCTATGGAGGTGGCGGCGGAGACCGGAGCTATGGAAGTGGTGGTGGATACAGGAGCGGCGGTGGTGGAGGATACTCTTCCGGTGGCGGAGGATACAGGGACAATAGGGGCCAGGGAGGCTACGGGGATCGCTCTGGGGGATCCTACAGAGACAGCTACGACAGTTATGCTGACGAGTAAAAATCTGCCCCCCGATTCAAGATCATCCCTTGGCTGGCTGTATTTAAAAAGATGCGCTCCTCTCAAGAAATTTGTCCACGTGTTGACCTGATGATTTTTTGTAGTCCTATTCTGTGTTTAAGTAGCTCGAGCGTCTTTAAATTTAGCCATTGGGTTTCGGCCATTCATTTACAAACCATGTTTAATAGAAGTTCCAGTTGGAGATGTTCTCTAAAGGATGCATCTCTATTTGCTCTTATGGCATTTCAATTGATAAAGCATAATGTCTGACTTGTTGGTGCTGCACATTTAGTGAACTCAAATATTGCTTCACATGGCTGTTTTTGAATAACAGCCTCAGTTACTTTCTACGCCCTGTTCCTATCCAGCACTGTCTGACATCACCATTTGAATCCTAAATATTAATATTGGGGATATCAATGGGGCTTGTTAACTTCCTGTTTTTGTTTTAAACGGCAATGTCCGACCTACCTCCTGCCAAGTTTTAAaacagtatataaaaaaaaaaaaaatattccactTAGATGCTTTTGAAAACTGGCCGGGAAGTGCTTTTTGGATTTTATGAATGCATTCCTTGTGTTGCTAGGCAGCAATGCCTTCACCCATACCATTGAGGTTCTTGATATAGCCGACGGTCCTGTGTTAAGTTTCCAAAAAGAGTGAATTCCTTTAAGGCTGGTGACACTGCACGCCTGAAGTGGCCGGCTGTTCATGAAGTTGCAAATTGCAGTGGGCTACAGTCTGCCCACGGTGTTTTGCTCTGCTCAGAAGCCTGCATTTTAAATGTGCTTGTTATAATGGACTTAACTTAAAgagaacaacaaaaaaacaattcaTACTGTTACTACTCTTCCCCAATATTCCACCTGGGAACGATTTTGTACTTTCTGTTCTTTGTATCATCAACATTgaagattatttttttttgtcaattttggCTTCATGGAGCCCATTAAAACGATTTGTTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852443 lncRNA upstream 20149 78966758 ~ 78967066 (+) True G750843
TU852440 lncRNA upstream 23640 78963346 ~ 78963575 (+) True G750840
TU852350 lncRNA upstream 54739 78932262 ~ 78932476 (+) True G750770
TU852339 lncRNA upstream 63691 78923294 ~ 78923524 (+) True G750759
TU852318 lncRNA upstream 94093 78892853 ~ 78893122 (+) True G750741
TU852496 lncRNA downstream 127056 79117755 ~ 79121181 (+) True G750892
TU852541 lncRNA downstream 177435 79168134 ~ 79169700 (+) False G750923
TU852543 lncRNA downstream 177435 79168134 ~ 79170910 (+) True G750923
TU852554 lncRNA downstream 195474 79186173 ~ 79186999 (+) True G750933
TU852586 lncRNA downstream 247289 79237988 ~ 79246034 (+) False G750957
XM_036986372.1 mRNA upstream 28189 78956235 ~ 78959026 (+) True LOC110531004
XM_036986371.1 mRNA upstream 34957 78939180 ~ 78952258 (+) True LOC110530709
XM_021613956.2 mRNA upstream 84238 78894591 ~ 78902977 (+) False LOC110530707
XM_036986387.1 mRNA downstream 69896 79060595 ~ 79066221 (+) False armc6
XM_036986386.1 mRNA downstream 71549 79062248 ~ 79066221 (+) False armc6
XM_021613970.2 mRNA downstream 71601 79062300 ~ 79066221 (+) True armc6
XM_036986388.1 mRNA downstream 76052 79066751 ~ 79093256 (+) True slc25a42
XM_036986389.1 mRNA downstream 220028 79210727 ~ 79347454 (+) False ncana
TU852454 other upstream 7234 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 189667 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 741600 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 1099859 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1604604 77353637 ~ 77382611 (+) False G749137
TU852557 other downstream 204571 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 354738 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 557798 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1640611 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1750905 80741604 ~ 80741945 (+) True G752398

Expression Profile