RNA id: XM_036986409.1


Basic Information

Item Value
RNA id XM_036986409.1
length 1597
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC110530727
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79587340 ~ 79596019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCACAACGACTCGCCCTACATCAGAGCACTTGGTTTCATGTACATAAGATACACCCAGCCCCCTGCAGACCTGGTGGACTGGTATGATGGTTTCCTGGATGATGAGGAGGTATGTCCACACGGGAGCTGGATGTGAAGGCCGGAGGCGGCTGCGTTATGACCATCGGTGAGATGGTCCGGTCGTTTCTCACCAAGCTGGAGTGGTTCTCCACACTCTTCCCACGCATCCCGGTGCCTGTGCAGAAGATGATTGACACACAGATGAAGGCAAGGCCCCGGAAGGTTCCTGAGAAGGTGGAGGAGCCGGTTGAACCTGTGCCAGAGGAGGGACGGGCGACAGAAGGGCGTAGACGCTCCCGGAGCCCCAGGAGGTCCCCCAAACGGTCGAGGAGCAGGAGCCACCACCGCGAACGAGAGCGCCACGGCCCAAGCTTCGACCGCGAACTGGAAAGGGAACGTGACCgccagaggaaggagagggagggtaaggacggggacaggagaggaggggacagggagagggagagaggggagaaggagagggagggtaaggacggggacaggagaggaggggacagggagagggagagaggggagaaggagagggacaggggaggagaaagggagaggcgaCGGTCCAGGAGCAGGGAACGCAAGGGAGAGCggaaagacagggagaaagaaagggaggggggCGGGGAGAACGACAAAAGCAGGAGGAAAGGcagtgacagagggagggagaggtccAAGGACAAGAGGAGCAAGGGAGAGACTGAGGACAGGAGACACAAAGAAGAgcgggatgagaggagggggcacagggaggagaggaaggccaAGCGCTCCAGTCGGAGCGGAAGCAGGGAAAGGAGACACAAGGAGAAGtccaagaagagaggagaagtccAAGAAGAGAGTGGAAGCAAGAGCAGGGCCGAggtgggggagaaggagaagagcaggaagagagagcgCAGCCATGAGAGGGGGGAGGGCGAGCAGCGCTCACACAAACGCAGCCGCAGCAAAGAGCGGAGCCACCGGCCACGAGAGCCCAGCAATGGGAAAGACCACGGGAAACACAGAGAGCGCAGGAGAAGCCAGAgcatggatagaggagagaggacgaCACAGAGCGCTAGGGCAGAGTCCCCTTAGCTCGTCACAGCtcttctctgcctttctctcttcaTTCATTTGTTTTACTTGTTTGTGTAGTCTGCCACGTATTataaaaagagaagaaaaaaacattagCACGAGAAACTACCTGGACTTGTCTTTGGCCAACGTAATGTTACTTTATGTAGATCTTTCTATCTCTGCCTTTCTCCTCCCTTTCTAGACCAGCGTTACTTTTCATTCGAGACAGTTGTATTAGAAAAAAAATGCCATTTTAAGTTTTATATGGTTTTGTCTCTGGAAAGTTCCAAATTGCTTTGTACATACGGGTCTGAGAATGTTTTAAATCCTACAGAGCAACCTCCGAAGGTGAATTTGTACCATGCACTGAGCCGTACTGATATTGTGCTGTGTTTGGTTAAGTGCTCTGTTGCATTTTGTTTTCTAATTAAACAACTTTTACAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852762 lncRNA upstream 12202 79577606 ~ 79577817 (+) True G751108
TU852744 lncRNA upstream 58869 79529741 ~ 79531150 (+) True G751090
TU852743 lncRNA upstream 60713 79529088 ~ 79529306 (+) True G751089
TU852731 lncRNA upstream 70954 79515752 ~ 79519065 (+) True G751078
TU852637 lncRNA upstream 79186 79508385 ~ 79510833 (+) True G750993
TU852764 lncRNA downstream 7739 79603758 ~ 79604084 (+) True G751110
TU852765 lncRNA downstream 8897 79604916 ~ 79606547 (+) True G751111
TU852774 lncRNA downstream 30603 79626622 ~ 79627210 (+) True G751119
TU852775 lncRNA downstream 33969 79629988 ~ 79630549 (+) True G751120
TU852776 lncRNA downstream 43660 79639679 ~ 79640870 (+) True G751121
XM_036986406.1 mRNA upstream 11009 79548127 ~ 79579010 (+) False LOC110530726
XM_036986398.1 mRNA upstream 82010 79447104 ~ 79508009 (+) False LOC110530721
XM_036986415.1 mRNA downstream 93248 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA downstream 93248 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA downstream 96624 79692643 ~ 79713549 (+) True LOC110530686
XM_021613989.2 mRNA downstream 437605 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 437653 80033672 ~ 80036953 (+) False LOC110530734
TU852726 other upstream 20142 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 242571 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 392641 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 610038 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 792471 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 1035291 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1145585 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1890801 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2187330 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 2326143 81922162 ~ 81926159 (+) False G753337

Expression Profile