RNA id: TCONS_00035341


Basic Information

Item Value
RNA id TCONS_00035341
length 2535
RNA type mRNA
GC content 0.53
exon number 13
gene id XLOC_017913
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 8122693 ~ 8443425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGTAGTCCAGGTCTGTGGCTGTCTGTCCCCGGCATGGGAAAGTGGATTACTGCTCTTCTACAGACGGTAGAGACTGGATACGGAGTGATTGCGCGTGGATTTTTATCATGAGAAGTATGGAATCTGAACGCACTACTTTAAAGCCCTTGCTGGGAGTGAATGCGATGCCGTGTCGAGGCTAGAGGCAGCGGTGGACTGTTCCAGAGTCAGTGGAAAGCCCCTCTAGATGAGCCAGTCACAGCCACCCAGCTGCACGGTAAAGGAATAAGGATTTAATATGTCAACAGAGGCCGAACTCCAGCCTGCTGCCAGACCCAGCGTCAGAAAGGACTCCAAGAAGAGaggGCAGGACCGCAGTGAAGCAGCTCTGATAAAGCGTTTTAAGGGAGATGGCGTTCGTTACAAGGCTAAGCTCATCGGGATAGATGAGGTCACTGCAGCTAGAGGAGACAAACTCTGTCAGGACTCAATGATGAAACTCAAGGGAATCGCAGCCTCTGCGCGGTCTAAAGGAGAACACAAACAGAAAGTTTTTCTGACTGTGTCCTTTGGGGGGATCAAGATCTTCGATGAGAAGTCGGGGGTACTTCAGCACCATCATGCAGTTCATGAGATTTCCTACATCGCGAAGGATATCACGGACCACAGAGCCTTTGGATATGTATGCGGGAAAGAGGGAAACCATCGGTTTGTGGCCATCAAAACGGCTCAGTCTGCTGAGCCGGTGATCCTCGACCTCCGCGACCTTTTCCAGTTGATTTATGAGATTAAGCAGAGGGAGGAGATCGAGAAGAAAGCTCAGAAAGACAAACAGTGCGAACAAGCTGTTTATCAGACGATTCTGGAGGAAGATGTGGAGGATCCCGTGTATCAGAATATCAACCAGTTAGAgctttttggagacatgtccacCCCTCCAGATATCACATCGCCCTCGACTCCAGCATCTCCGGCTAACACTCTGGACCCCTTGCTGGCCCACCAGACCCCATCCGAACTGTTCACCCCCTTCAACCCCGCCTCTGTACCCTCAGGTTATGTGACGATGGGAGCCGTGCCACCTGCGTGGGCGCAGCAACAGTTTGCTGCTCAGGCTCCATTAGCGTTTGGCGTCCAATCCCCAGTGCAAGTTGCGCAGGTCTTACCGGGCACTCAGCCTCTAATCTGGGGTCAAGCCAACCTTTTCCCTGCCACTCAGCAGCAGTGGGCTGCGATGGCTGGGGCTCACTTTTCTCCTGCCGCTTTCATGCCTGCCCAGACAGTAGGACCACTTCCTGCTGCCATGTTTCAGACACTGGCTCCTATGGCAGTGCCGGCATCCTGCGAGACGCCCACAGCGGCCATGGGTGGAGCCGTGGCAGGAACCTCGGCCTCCACGGCCTCCAGTCCGCAACATGGAGAGCGCACACTGCAGAGACAGGCAAAGATGAGCAAGGAGATGTTTAAGGAATTCCAGATGGCAAAGCCACCGGCCATGCCTGCCAGGAAGGGCGAGCAGCCTAGCCTATCCTGCACCACAGACGCTTTCTCCAGCTACTTCAGCAGAGTGGGAATGGCGCAAGACACGGATGACTGTGACGACTTCGATATCTCGCAGATGAACCTCACACCCGTCACCTCCACCACACCCTCCACCAACTCACCACCCACCCCGGCCCCTCGGCAGAGTTCTCCATCAAAGTCCTCATCCCACGCCAGTGACCCTCCCACCGATGACTCTTTTGGTGAGGCAGAGGGCAGCCCTAGTCGGAGTGGAGAGGAGGATGCTGCTGGAGACTGTCCGCAGTCTCCGGGTGCGAGTGAGCCTCAAGCAGAGCCTGAGAGCTCAGAGACGGACAGTCCTCAGGGGAAGGACCCTCTTTATGCCCAGATCAACAAGGGGAAGAAGTGAAGCATCATGGGAACTCTGCACAGACATGATCAGCGCTGGGGGGAGCAGGAGACCAAAAACACtggagatctgtgtgtgtgtgtgaatgtgtgcccGTGTGTGTGCGAGTGTCACTCCAGCCTCAACGGTCCACTTCTCTAGAGCCGCCCGTCCCCCATCACCACGTCCTCCGCCACTCTCTCCACGACACTTTGTTTCTTTCGCACTGTGTTCAATGCACATGACAGCGGGGCATTGTGGGGGATTTTCGACCCTTCAGCACCCCTCATAGCCTTATGAGCCCAGCTCTGCCGCTTCATCCATTCTCACGTTTCCTACTTCCAGTTTCGGACTCTGTATAGAGGAAACTCTGCCCTGCCGGATCCATCTGTGACTTCTTCATCCATTTTCTTGGGGTTGGTTTGGATTTTCCTCTCCTGCGTATTTGAGATTCTGCTGCTAGAAAGCTATGCAGAGCTAAAAAAAATTTACCGAAAACAATATTTCGACGAGGAGGAGCGACTTTTGCCAAAATCTCAAGATTTCGGAGCAGCTGAATCTGACTGGGGGTCTCGAGGGTAAGGACGTTTGCTAAAAACGAGTGATCAAACTGTTCCTTCTCTATAGCTTTTGTACAATactaatgagaaaaaaaacaaaaa

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-060528-1 Predicted to be involved in lateral motor column neuron migration and ventral spinal cord development. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; immature eye; pronephric duct; retina; and spinal cord interneuron. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 37. Orthologous to human DAB1 (DAB adaptor protein 1).

Ensembl:

ensembl_id ENSDART00000145841

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036797 lncRNA downstream 169521 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 484051 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 911507 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036448 lncRNA downstream 983561 7138063 ~ 7139142 (-) True XLOC_017902
TCONS_00036447 lncRNA downstream 1642190 6478510 ~ 6480513 (-) True XLOC_017894
TCONS_00035348 lncRNA upstream 375445 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00036798 lncRNA upstream 1658100 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 1694971 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 1928726 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 1928726 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00035339 mRNA downstream 12031 8101070 ~ 8110672 (-) True XLOC_017912
TCONS_00035338 mRNA downstream 27985 8081709 ~ 8094718 (-) True XLOC_017911
TCONS_00035335 mRNA downstream 98121 7964356 ~ 8024582 (-) False XLOC_017910
TCONS_00035336 mRNA downstream 130207 7965215 ~ 7992496 (-) False XLOC_017910
TCONS_00035334 mRNA downstream 474378 7646762 ~ 7648325 (-) True XLOC_017908
TCONS_00035350 mRNA upstream 639622 9058679 ~ 9095105 (-) False XLOC_017916
TCONS_00035351 mRNA upstream 674309 9093366 ~ 9123296 (-) False XLOC_017916
TCONS_00035352 mRNA upstream 677139 9096196 ~ 9123052 (-) True XLOC_017916
TCONS_00035353 mRNA upstream 753244 9172301 ~ 9194257 (-) False XLOC_017917
TCONS_00035354 mRNA upstream 754450 9173507 ~ 9199721 (-) True XLOC_017917
TCONS_00035337 other downstream 128619 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035333 other downstream 493432 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 1051092 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035317 other downstream 1310023 6809621 ~ 6812680 (-) True XLOC_017897
TCONS_00035315 other downstream 1539033 6581799 ~ 6583670 (-) True XLOC_017896
TCONS_00035349 other upstream 517846 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035364 other upstream 1225008 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 1333474 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035370 other upstream 1358122 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035371 other upstream 1487211 9906268 ~ 9906384 (-) True XLOC_017925

Expression Profile

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