RNA id: XM_021613987.2


Basic Information

Item Value
RNA id XM_021613987.2
length 1356
RNA type mRNA
GC content 0.56
exon number 6
gene id LOC110530734
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80033624 ~ 80036953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCAGGAAAGCCTCACCCGAAGATGCATGGTGGCTTCAAGGAAGTGGTACATGTCATATGACCAAAACAAAAATAGCCATTCTTCCGGGGATGATAACTTGAGCGGTTTCAAAGGGAGGTGAGAAGAGACCGTGTGGAGAGTGTGTTGGGGGGATGGAGGAGTTTCCAGTGAGGACGGTGGAGGGGCTGTGTCTAGGCACCAGCTTGGCCATATCAGGCCTCTTCTTCTACatctacaggaaaaagaggaaatCGGTGGACAAGCTCAATGAGGCACCCCACATTAATTTGGATGGGAAACTGGCAGACCTTTTGAATGTGACACCAGGAAAGTGTCTGCAGTATGTTGTCATCGAAGgaGCAGTGCAGCCTGTGGGGGAGCCTCTAAGGAGTCAGTACCAGGAAGGCAGCGTAGGGGTAGTGCAGAAACTCATGCTAAGGGAACACAAGCTGGTGTGGAACAGCCTGGCCCACACCTGGATGGACAGTGAGTGCGTGCTGCACCAGAGAGTGAATACTGTGCCCTTCAGCCTGGTGGGGTCGGACCAGGCCAACGTGAGGGTGCTGTGTCCCCTGGAGGCCTCAGAGCTGAAGATGGAGATCCTCCATGAGAAGTTCCACCAGGCCACCTACGGTTTCACCGACATCGTCGGACAGTACCTCAGTGGAGAGAAGCCCAAAGGCCAGCTGGAGACTGAGGAAATGCTCAAGGTTGGCGCTACTCTTACAGGTGTAGGCGAGCTCATCCTGGACACGGACCGGGTGCTGAAGCTCCGCCCGCCCACCGACGGCTCAGAGTACTTCCTAAGCACAGCAGACTTTGAGACCCTGCGGCTGGAGCAGGAAGACCAGGCGGTGGTCTGGCGGGTCCTGGCCTCTGTGTTCGCCCTGGCCGGGGCCGCCGTCCTCCTCTGGGTGGGCTGCCGCTACTACCGCAGCCTGAGGGTCTGCTGGGAACAGGAACGTCTGAAGAGGGAGTTTGAGACACTGGGCGCCGGGGGGTCTGGGGCTACACAACAGGGGTCTAGGGAGCAGGAGACGCCCCTGGAGAATGACTGTGTGATCTGCCTGACCCAGCTCCGTAGCTGTGTGCTACTGGACTGTGGGCACGTGTGCTGCTGCTACAGCTGCTACCAGGCCCTGCCTCAGCCCATCTGCCCCATATGCCGGCAGGCCATCAACAGAGTGGTGCCCCTCTACCAGGCATGAAGCCCAGCCAGGGagaacaaatcaaaatcaaatgttatttgtctcatacacatgtttagcagatgttattgcgggtatagcgaaatgcttgtgttcgtagctccaacagtgcagcaatatctaacaattcacaataatacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU853741 lncRNA upstream 3760 80029511 ~ 80029912 (+) True G751875
TU853045 lncRNA upstream 18611 80014152 ~ 80015061 (+) True G751316
TU853009 lncRNA upstream 77455 79953398 ~ 79956217 (+) True G751291
TU852961 lncRNA upstream 135457 79897071 ~ 79898215 (+) False G751250
TU853743 lncRNA downstream 5530 80042483 ~ 80042752 (+) True G751877
TU853752 lncRNA downstream 15939 80052892 ~ 80053112 (+) True G751886
TU853763 lncRNA downstream 31959 80068912 ~ 80070354 (+) True G751896
TU853749 lncRNA downstream 34694 80071647 ~ 80074536 (+) True LOC110530735
TU853829 lncRNA downstream 142772 80179725 ~ 80180553 (+) True G751960
XM_036986415.1 mRNA upstream 320123 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA upstream 320123 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA upstream 320123 79692643 ~ 79713549 (+) True LOC110530686
XM_036986411.1 mRNA upstream 437653 79590631 ~ 79596019 (+) False LOC110530727
XM_021613991.2 mRNA downstream 34610 80071563 ~ 80074533 (+) False LOC110530735
XM_036986427.1 mRNA downstream 275572 80312525 ~ 80327493 (+) False acsm3
XM_036986428.1 mRNA downstream 275572 80312525 ~ 80327493 (+) True acsm3
XM_021613994.2 mRNA downstream 291578 80328531 ~ 80339721 (+) False map6d1
XM_036986452.1 mRNA downstream 861282 80898235 ~ 80924566 (+) True LOC110530801
TU852726 other upstream 463795 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 686224 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 836294 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 1053691 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 1236124 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 594357 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 704651 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1449867 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 1746396 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 1885209 81922162 ~ 81926159 (+) False G753337

Expression Profile