RNA id: TU853749


Basic Information

Item Value
RNA id TU853749
length 2226
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110530735
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80071563 ~ 80074536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGCGTACAGACCGctcttcctctgctctcctctcgaACAGCGACACAACAGCCTGCAAACACCCCGCCTCAACCCGGACTCGGAACCTTCAACCTTCACAGGCTGGCTAAGCACGAAGAAGTCAATTAGTGATTTTCCAAACGGATTTTCACTGGAAAGCTCGACAAGTCTAATTACCAAGCCAAGGATTTCTGGGCTACGTCAATTATAGCCGCCAACtttaaacagtttttttttgttgcgcTGTTGATCCGTCAGTCTCAGCCGTGCAATAATGTCCGAGGTACTGCCGTACAGCGAGGGGAAAATGAGCGGCTATGGAGACAGCGAGGCCAGTCAGGTGTCCTTTAGCTGCGGTCTACAGGACACCAATTCGTTCTTCGGTGCGTCGCAAGCGAAAAGACCCCCAAAGCTGGGACAGATCGGCAGAGCCAAGAGAGTGGTCATCGAAGACGACAGAATAGACGACGTTCTAAAGGGGATGGCAGACAAGTCGTCACCAGGCGTTTAAAGATGAACAATGCCTTGCAGACTTTTTATTTTGATCACCGATTTGAAGCACTTGTCGGCTGTGCATGTTCGAGGATTGTAGGAGAAACGATGGCACGAAGCGAAGACAAGGGGAAGGAAAGGGGTGGAAAGATGTGAAGATTGGACGAGAAAGCAGAGGAAGAGTTTGAGGAAGAGTCCGGAAAAGACCGAGATTTATCTTGTGGTTGCTGACAATTTGAAACCCGATTTTAACTTCTGCTGCGCAGCGTGATGTTGAGATGGCGGATCCTGGCTCCGTGTCTCAACCTCAGCTGACTTCTCTGATGGATGAACTTGCCATAACTTCACGACCATCTTCCAAAAGCGCCGTAAGCAACAACAAACTAGAACTGGTGGCAGAATTTCATTTAAAGCTctgtttctatagttgtacccAGTAGACTGCCTATGCTCGAAGACCATTATTACCCTTGCAGGCTTTGCATTGTTGATAACAATCGGCGACATCGCATTCAAGGGAGCTGTACTTTTCAGCATTGGTCGAACGTAGAATGCATTCCTATCCGATTGCTGCTAAAGCTTTTTAATACAGACCAACCAAACACTGATATCCAGAAACTAGAATACATCCATTGTGTGTAACAGAAATATATATACAGAGGATGGTGCAATGTTAATATTTTATTTCGTAGGCCTATATTCACTTTGGCTTCACCTGTAAAGAATAAGCTAGTAGGCCTAATGCATAGTCCCCAGGTTCAATTGAATGAAATTGATACATGGGCTTACATTACCCCCCACGGTTAAAGATGCAGGTCGGCGCCTTCATGTAACTTTAGCCTACCGACACCTGCACATAGGCTCTCTGTTTCACTTTTACAGACTAGAAATATCGAAGGAGGCCAGAAGAGATGGGCAAATTATACATGTTTGAAACAATAATCATGAAATTAatgggaaaatatatattttttaatttatttattttgatgttGCAATTATTCGTGTTTTTCGTGTTCTATAATTAAAAGTCAAATATTTTATCTATCTATTTGCATGATCTTTCCCTCCGGTGCCACCACAGGTGCCAACCACTCCTACCCTGGCACGCTTACATTCATATTTCAAAAgtcatatttgtatttttatatcTAAATAATTGTTATTTAAAAATTATAAGCTAGTCTATCGTCTTACAGTTCATCAACACAAATGTTTGTATTAAAGAGAGGATATGCAGATTGAGAATAGCCTATATAACGGAGAATCTTAAGAGATTTGGGTGTTGACTTTTCTCATTCTATATCAAAGGGACTGACGTTTTTTTAAAGACTAACTGAATGTGTTTGGGGTTTTGTACACATCAATGTTAAACTATTATTGAGAAATCGTATACTGTGACTTAAGCTTCGTTGATGCATTTGTTAGAAAATTGCGATTTTAGAGTATATTGCACTGTTTACGAGTATCCTCAAATAACACGTTATTTGACCAATTTTGGACATTACAGTTATGTTTTTTATTTCGTTTATCTTGTACCATTCTTTGGAGGAAACTGAATATGGTTTGTTGTGCATGAAACCTTAATACTTTCAATAATGAAACATCGTTTTATGAAGCAAAAAAGCAACAAAAGTGTCATGACATTCTAAGAATGAGTCATTGTATATTAAGATGCCATTTTCACTGTATTTGGTGAACTAATAAATGGTGAAAGAACATGTCAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU853763 lncRNA upstream 1293 80068912 ~ 80070354 (+) True G751896
TU853752 lncRNA upstream 18535 80052892 ~ 80053112 (+) True G751886
TU853743 lncRNA upstream 28895 80042483 ~ 80042752 (+) True G751877
TU853741 lncRNA upstream 41735 80029511 ~ 80029912 (+) True G751875
TU853045 lncRNA upstream 56586 80014152 ~ 80015061 (+) True G751316
TU853829 lncRNA downstream 105189 80179725 ~ 80180553 (+) True G751960
TU853898 lncRNA downstream 254092 80328628 ~ 80328834 (+) True map6d1
TU854112 lncRNA downstream 267311 80341847 ~ 80342112 (+) True G752211
TU854122 lncRNA downstream 282970 80357506 ~ 80357708 (+) True G752218
TU854124 lncRNA downstream 287673 80362209 ~ 80362515 (+) True G752220
XM_021613989.2 mRNA upstream 34694 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA upstream 34694 80033672 ~ 80036953 (+) False LOC110530734
XM_036986426.1 mRNA upstream 34694 80034705 ~ 80036953 (+) True LOC110530734
XM_036986418.1 mRNA upstream 358098 79689267 ~ 79713549 (+) False LOC110530686
XM_036986427.1 mRNA downstream 237989 80312525 ~ 80327493 (+) False acsm3
XM_036986428.1 mRNA downstream 237989 80312525 ~ 80327493 (+) True acsm3
XM_021613994.2 mRNA downstream 253995 80328531 ~ 80339721 (+) False map6d1
XM_036986452.1 mRNA downstream 823699 80898235 ~ 80924566 (+) True LOC110530801
XM_036986454.1 mRNA downstream 863886 80938422 ~ 80965389 (+) False LOC110530803
TU852726 other upstream 501770 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 724199 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 874269 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 1091666 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 1274099 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 556774 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 667068 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1412284 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 1708813 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 1847626 81922162 ~ 81926159 (+) False G753337

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032919 True 2125 mRNA 0.41 2 NC_007113.7 44943396 ~ 44946094 (-)
grasscarp (Ctenopharyngodon idella) TU409926 False 2836 lncRNA 0.42 2 CI01000152 1890149 ~ 1893459 (-)
rainbow trout (Oncorhynchus mykiss) TU409926 False 4824 lncRNA 0.36 3 NC_048569.1 5334043 ~ 5339341 (+)
eurasian perch (Perca fluviatilis) TU159094 False 3058 lncRNA 0.42 2 NC_053122.1 26315822 ~ 26319563 (-)
bowfin (Amia calva) AMCG00009563 False 2089 mRNA 0.40 2 CM030126.1 41596308 ~ 41599124 (+)