RNA id: XM_036986454.1


Basic Information

Item Value
RNA id XM_036986454.1
length 1222
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110530803
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80938422 ~ 80965389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCAGCTGTTGTGTGACACCTTTATAAAATGGGTCAGCTGCTGTGTGACTGAAGGAGAAACCAACCTCACATGACAAGGCACTTCATCTGTCAATGGGACTATTGTAATATGCGTTTCCTGCTCCTCTTCAGTCGCCAGGGCAAGCTCCGTCTCCAGAAGTGGTTCACGCCCATCCCCGAGCGAGAGAAGAAGAAGATCACCAGGGACATGACCACCATGGTGTTGGCACGGAAACCACGCTCCTGCAACTTCCTGCACTGGAAAGACCTAAAGATCGTCTACAAGAgGTATGCCAGTCTGTATTTCTGCTGTGGTCTGGATGCTGAGGAGAATGAACTTCTGGCCTTGGAGATGCTGCATCGCTATGTGGAGCTGTTGGACAAGTACTTTGGCAACGTGTGTGAGCTGGACATTATCTTTAACTTTGAAAAGGCCTACTTCATCCTGGATGAGTTTCTATTAGGGGGAGAGGTACAGGAGACTTCCAAACTAGTGGTGGCCCGCTCCGTCGAGGCCTCGGACATGCTACAGGAGAAACAGAGACTGATGGAGATTATACTTCTATTTCCTTTATTCTTCAGTTGCTACCATGGAGGAATACATGAGCAAGCCTGCATTCTAACACTGGGGGAAATGGATCTACACACACCAGAAGGAATCTGGACGATTACAGACCTGGAAGTCTTACTACTGTACAGAACCATGGAGTTATGAGTTCTAGAATTATATGTCTGAATCTGTGTCCTGAGGCAGGCAGGGAGTGTTTTTAAATAGGGAAGTGCTGTGAAATGTATCTTGTTTCTGCAAATAGGACAATAACATGATGACCAATAAATTGGTAGGAGGCACTCAATGATTGAGCTATTATCAAATGTATATTGATACTGTATGATCACCCATCCCTCTTGCTCGTCGATGTACATTGAGGTTACTGAAAACTGTGGTTATGACAATCATTAAAATCAATACTCacattttttttcccccaaatATGTACGCTCTATTGACATTTTAAGAAGTGCCtttttagaaatatgtatttGAAGTTGTGTTTTAAATGCATCTTGTAGACTAGCCTTTTTCTGTGTGACTTGTTGTAGGATTATATCTTGGAAAGGGAGTGATTATTTATCTGGGTGAATGTcacagttttttttatatataactAATTATGGATCTTGAATGTTGAAGACTTTGGaattaaaatgtgtattttgatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU854392 lncRNA upstream 62738 80873305 ~ 80875684 (+) True G752456
TU854335 lncRNA upstream 79222 80767695 ~ 80859200 (+) True G752407
TU854374 lncRNA upstream 117409 80819597 ~ 80821013 (+) True G752442
TU854355 lncRNA upstream 171782 80766371 ~ 80766640 (+) True G752424
TU854352 lncRNA upstream 175494 80760545 ~ 80762928 (+) True G752421
TU854728 lncRNA downstream 847 80966236 ~ 80968434 (+) True G752736
TU854730 lncRNA downstream 5261 80970650 ~ 80970868 (+) True G752738
TU854737 lncRNA downstream 10433 80975822 ~ 80976084 (+) True G752745
TU854754 lncRNA downstream 23583 80988972 ~ 80989744 (+) True G752757
TU854788 lncRNA downstream 53687 81019076 ~ 81019292 (+) True G752781
XM_036986452.1 mRNA upstream 13856 80898235 ~ 80924566 (+) True LOC110530801
XM_021613994.2 mRNA upstream 598701 80328531 ~ 80339721 (+) False map6d1
XM_036986427.1 mRNA upstream 610929 80312525 ~ 80327493 (+) False acsm3
XM_036986428.1 mRNA upstream 610929 80312525 ~ 80327493 (+) True acsm3
XM_021613991.2 mRNA upstream 863889 80071563 ~ 80074533 (+) False LOC110530735
XM_036986456.1 mRNA downstream 71712 81037101 ~ 81075897 (+) False LOC110530752
XM_036986457.1 mRNA downstream 71712 81037101 ~ 81075897 (+) False LOC110530752
XM_036986458.1 mRNA downstream 111276 81076665 ~ 81189157 (+) False LOC110530753
XM_036986460.1 mRNA downstream 111276 81076665 ~ 81189157 (+) False LOC110530753
XM_036986461.1 mRNA downstream 111276 81076665 ~ 81189157 (+) False LOC110530753
TU854325 other upstream 196477 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 304370 80631310 ~ 80634052 (+) True G752357
TU852726 other upstream 1368545 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 1590974 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 1741044 79195270 ~ 79197378 (+) True G750935
TU855294 other downstream 521431 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 817960 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 956773 81922162 ~ 81926159 (+) False G753337
TU857445 other downstream 2290350 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 2663983 83629372 ~ 83629738 (+) True G755286

Expression Profile