RNA id: XM_021614007.2


Basic Information

Item Value
RNA id XM_021614007.2
length 1421
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110530754
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81196167 ~ 81200421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTACACGTGTCCCAGTTATCACCAGGTCATGGTTTAAGAGGACAGGATATAAAGGGGTCAACTGAGACTCCAAAATAACAGCAGAAATAACCACAAGAAGAGGAAATCATCACCCAGGAATGAGAATGAAGAGTGTTGTATCTCTGCTGGTGTTGCtgcactgctgtctgtctggagcCCAGGTCcacaaagacagagatggagTCAGTGTGAATGAGATCCAGCAGGTTGactatgaggacagagagagcagagggaaggaCATTCAGACTGACAAGCAGAGAGCTGAAGCTGCATTAACACACAGCCAGCAAACCTGCCAGCCTGACATCCACACTGTGCTGAGAGAGATGAGCACCATGATGGCAGAGCAGAGAGTTGAGctgagacacacaaagactgaactGGAAGCCATGGAGGCCCGACTGAGAGCCAGTGAGAGCCGACTGACAGACAGTGAGAGCCAAGTGGAGGAACTGAGCAAAATGAATGAAGCACAAGCAGTGAAACTAAACTCCATGGAGACTCGTTCTAACATCACTGAGAGCCACGTTGAAGATCTGAAGAGAAACAGTCATGACAGGAAGGTGGctttctcagcctcactagcagCACCTGGTCAAGGAGGACACACTGGACCCTACAACACTGCAATCACCCTGGTCTACAGAAATATCTACTCAAACATTGGCAATGCTTATAACCCCACTACAGGGATCTTCACAGCACCAGTGAGAGGACTCTACCTCTTCAGGTTTTACATCTATGGAGAGGGTGACAGTTCAGTTCCTACAACTACATTCTTGCATAAGAATGGATATCAGATAGCTACTGCACATGCTCACCAAGCTAGTGGTGGTATTAACTCCTCTAATGGAGTGTCACTGCTGCTGGAGGTAGGAGATGTGGTCTACATGTATCTCTGGGCTGGGAGAAAGATATATGATAGTGAATATCGCCACAGCACCTTCAGTggtcacctgctcttcactatgTAGGAGGGTTATTGAAGGACTCTATCAGTGATCTGTTCTGGAAAATATTCAGAACTTTTAGTAACATTGTCTTAGCGTTGAATGTTCTCCATTTACTCTCTAATAGTTCAAACTAAGGCAGTTCTCAAGGAGAAAAGTAGGTGAAATTTACAAGATTTAAAAATACATATCGTATCCAAGTTTtcaaaaaagaaaaataataacaaaaaatACTCCGAATGAAAATATTAAATTAATCTaaagattatactgtacactgacttCTTTAATTCATGTATAgatgttgaccccccccccctcatcccccccACCTCTTACTTCCTTTTTCTGCTGTAAATTGAAGAGTGGTAAACATTGTGTTGAGTATAATGTCATAAAGAGTTTATCAAAAGAATGACAAAGTGTCATTacacgaacacacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU854779 lncRNA upstream 25760 81170129 ~ 81170407 (+) True G752772
TU854865 lncRNA upstream 29318 81161813 ~ 81166849 (+) False G752844
TU854864 lncRNA upstream 29318 81162504 ~ 81166849 (+) False G752844
TU854862 lncRNA upstream 29804 81163517 ~ 81166363 (+) False G752844
TU854866 lncRNA upstream 30216 81163998 ~ 81165951 (+) True G752844
TU855029 lncRNA downstream 12787 81213208 ~ 81214740 (+) True G752980
TU855032 lncRNA downstream 14549 81214970 ~ 81215730 (+) True G752981
TU855059 lncRNA downstream 77559 81277980 ~ 81279340 (+) True G753005
TU855061 lncRNA downstream 82120 81282541 ~ 81283337 (+) True G753007
TU855096 lncRNA downstream 153466 81353887 ~ 81397911 (+) False G753037
XM_036986458.1 mRNA upstream 7010 81076665 ~ 81189157 (+) False LOC110530753
XM_036986460.1 mRNA upstream 7010 81076665 ~ 81189157 (+) False LOC110530753
XM_036986461.1 mRNA upstream 7010 81076665 ~ 81189157 (+) False LOC110530753
XM_036986462.1 mRNA upstream 7010 81076665 ~ 81189157 (+) False LOC110530753
XM_036986463.1 mRNA upstream 7010 81076665 ~ 81189157 (+) False LOC110530753
XM_036986888.1 mRNA downstream 156538 81356959 ~ 81365769 (+) True LOC118965638
XR_002474338.2 mRNA downstream 216719 81417140 ~ 81418322 (+) True LOC110529142
XM_036986471.1 mRNA downstream 217951 81418372 ~ 81435684 (+) False LOC110530755
XM_021614008.2 mRNA downstream 217951 81418372 ~ 81441728 (+) False LOC110530755
XM_021614009.2 mRNA downstream 217951 81418372 ~ 81441728 (+) False LOC110530755
TU854325 other upstream 454222 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 562115 80631310 ~ 80634052 (+) True G752357
TU852726 other upstream 1626290 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 1848719 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 1998789 79195270 ~ 79197378 (+) True G750935
TU855294 other downstream 286399 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 582928 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 721741 81922162 ~ 81926159 (+) False G753337
TU857445 other downstream 2055318 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 2428951 83629372 ~ 83629738 (+) True G755286

Expression Profile