RNA id: TCONS_00035353


Basic Information

Item Value
RNA id TCONS_00035353
length 4940
RNA type mRNA
GC content 0.47
exon number 20
gene id XLOC_017917
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9172301 ~ 9199721 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gAGCAGCAGGAATACTGGTACCAGCAGCACCTGCAAAATTTGCAAAAGTTGAAAAATGAGAAGGCAAAGCAAAATCAAGGTTCTTTTAATGAAAGCCATGCTTCAGCTCCTCCGCCTCCAGTTGAACCCCCAAAGAGCACCCCTCCACCTCCACCACCCAAAGAGGaacctcctcctccacctccacctGACGAATCACAGACCCAGCTGAAGCAGCACGTCTTCAGCAACTGCAGGTGGCAGCTGCACAATGGCAGCAGGTGCAGCATCAAAGGGCCAGCTTTCAGTACCAGGCACTGATGCAAGAGCATGCACAACTACAGCAGATCCTGCAACAATACCAACAGGTTATTCAACAGCCAGCGCATCTCCAGACAATGCCTTTCGAAATGCAGTTGCAACACTACGAAATGCAACAACAGCGATTTGCTCCATTGTACCAAGAATGGGAAAGACATTTTAATTTGTGGTTAGAACAGTTTCAGATGTACCCACATAAAGATCAGCTACATGATTATGAAGCCCAGTGGAGGCAATGGCAGGAGCAAATGAATTCAACTTCAGCTCATCTGCAAGAGAGGGTCACGACTTTAAGAGCCATGCAGCATCAGTATGGTTCTTCATATGGAATGATGGGATCATATGGGCAGCAAAGTCCAAATGTCCAAATGGGACCAAATGGAAACATGAATTTAGTAGGCCCAGGAACTCCATCTATGCCACCGCCAGTCACCATGGATGCCATGCCAGCACCATCAACACAAGGCCCATCACAattTGAAGGTCCTAGAGGCCCACAATTTGAACAGCCACCCCAGCAACGATTTAGTGGACCACCCAGATTTGATGCTGGTCAGCGATTTAGCCAACCTCCTAGAGGTAATCCTCCCTTTCCAGGGGCTCCAGCAAGGCTGGAGAACCCCCCTAGACAGAATACCCCTACACGCTTTGAAAGACCTCCTGTAGCTTCTCAACAAACTGGTTCTGGTCAACAATCCAGTCCTGTAACTGGCAATCAAACAAAGCAACAATCAGCAAAACCTGAGGCAAAGCCAGTTCCTCCATCTTATACAGACCCAGACAAAGCTAAAAGTCCTTTAAGTCAAAGTActcaaaaagaaaacaattccTCTGCTCCATCCATGACAGACGACCTTGTGGACTCAGTGGATGGATTTTTTATTCAGAGTGGACCCATTCCTCAAACTAAGGATTCTGATAAAACTGATGCAGACAGTGCAAAGcaagataaaacaaaagaagTTACTACAAAACCATCTGCACCTACGGATGCCCCAGACACCACAAACAAAAACTCTAACTTGCAACCTCCTAAGACCAGTCATACTGCTAATGGGCCACCACAACAAGTAAAGCCTCCTCAAAACAAATTTAAACCTGATACACCCAAGGAGACTCCTAGGATGCTACCCATGATGAATCAGCAAGTTCCACCACAGATGGCACGGGGAAGAGGACGAGGCCAAATACCAATGCCTCTCCGAGGCAGGGGTCGTGCACGTGGTCGAGGGCAGTATGGCGGACCAATGGCTGATCCCAACTTCCAAAGAGAAATTGAGGAGGATTCCTATGACCATCAGGAACCAGGCAACGCAAGTCATGGCGAGGATCAGGATCGTATTTGGAGAGATCCTTCTTTAGATGGTCCTGAAGAAATTGATCAGGAAGCACCTTTAGAGATTTGGCAACCAGAGGAGGAACACTTTCCAGAGGAGTACCCAGAGGACACTCACCAAGATGAAAACTGGGAAGAAGAACCACAGGATTATTGGGAGGAAGAAGATCCATATTGGGCAGAGCAACGACCTGCCATGCGTGCTAGACCTCCTTTTCCTCCAGGTGGCCCCAGAAGACCTCCTTTCCATCCACGATTTATGCTTCAAGGTCCAAGGCGCCCTCCTCCTCCTGGAAGTTTGCAACATAACCCACTTGGACCTCCTCCGTTTCGACCACGTGGGGGAGTTGTACCACGATTCAGACGTGGTTTAGGCCCTTGGGGACCATTACCCCGCCATGACATGATGGAGCGAGATTTAAGACGACCACCAGCACCTCATGAAATTATAGCTAGGGAACCAGCTGGTCCTCATGGATATGAAGAAGAAATTGACAGAGAGCCTGCATGGCCTCATCCTCGTGGTAGAGGGATTAGACGACCACCTTTGCCACCCCATGAAATGGGAAGAGGCATTAGAAGACCACCCATGAGGCCTGCAATGCCAAGAGAAAGGTGGCATGGCCCACCACCTCATGAAGAAGAGAATTATGAGGAGGAATACCCATATGGTGCAGAGGATGATGTGTACAGAAGGCCACCTCATGAATACAATGAAGATTATGAGCATGGAGATGAGTATTATGGCTCTCGTGAGGAATGGGACGGGGAGCAACCTGAACGAGACTATCCTCCACATCGTCCTCCAGAACGTGTTAGAGAGGATCCATGGTTAGAGGAAAGAGAAAGATCATTCCCATATGAGGAAGACCGATATAGAGAAGAACGAAGGGGACCTTTTTACCCTGATGATCCACCTTATCAAGACCGAGATCGGGAGCCTCCATTTCATTCACGTTCTGATTGGGAAAGGCCCCCACCTCCACCCCCACCAGAAAGAGGATACTCCCGTTCACTTAGTGAAACGGATTATGAACATAAACTGGATCCACTAGCTAGCCTTCCCGCACCTCAAGCCACAGATTCCCCACTTGATGAGTCTTCACCTAGCGCAACTAAGGCTGTACTTGCTCTTTCTCAAAGGCAGCATGAGATCATTCTTAAAGCTGCCCAGGAGCTAAAAATGATCAGAGAGCTTCAGGAGACCAAAAAGGCTTTAGGAGAGGTTTCCACCACAGAGTCAGCTGGGTTGCCTTCAGAGCTTCCTGCTGGCATCCTTGGATTGGAAATTCCACCAGAGGTTAAAAGTGCCCTGCAGGCTACCAACTTATTGTCTGAAACTGGACAGACATTCAATGCTGGTTTGTCCTCAAATCAATCTACAGATTTTCTTTCTTCAACTGCCCCTACAGCCTCATTCATTGCTAAAACTGTGGACTATGCGCATGGTCGTGATGGGGGTTCAACAGTGGAAAGAATTTCTTATGGGGAGAGGGTCTTGCTAAGACCTGCTCCAGCTCCATCTGAGCGATCTTATGAGAAAGAGTTGCTTGGCCATAGAGATCCATATTATGACAGAAGAAGTGACCCGTATGCTGCCAGAGATTATGACAGGGAGTGGGAGAGAGATCCATATAGGGAGAAGCCGACTTTGGATTATGAGAGAGACAGATATGAAAGGGACCGCTACCTACGAGATGAACGAGCTTCACTCGGGCCTCGTCcaacatacagagagagagaaagagaacacTCAAGCCGCTCAAGCAGGGATCGAGAGCTTTATAATCGACCAAGCTATGAGAGATCTTCCTATGAAAGGAGTCTTGAACATTATGAGCATGGATCCTCAAGCTATGGTGAACGGAGAAGTTATCCAGATGAACGGCAGCCTCCACCCACATCCCTTCCTCCGTCTGCACCTGTTGCCCCACCTGTGGAGAAGAAACCAGAGATTAAGAACGCAGAGGACATCCTTAAACCCCCCGGTCGATCCTCTCGGCCTGACAGGattgtgGTTATCATGCGTGGATTACCTGGAAGTGGCAAAAGTCATGTTGCAAAACTTATTCGGgATAAAGAGGTTGAATGTGGTGGTGCGCCACCCAGAGTTCTCGGCCTGGATGATTATTTCATGACTGAAGTGGAAAAAATTGAGAAGGACCCTGACTCTGGGAAACGTATAAAAACCAAGGTGCTTGAATACGAGTATGAACCTGAGATGGAAGATACTTACCGAAGCAGCATGTTGAAGACATTCAAAAAAACACTGGATGATGGCTTTTTCCCCTTTATAATTTTGGATGCCATCAATGATAAAGTGAAGTACTTTGACCAGTTCTGGAGTGCTGCTAAAACCAAAGGGTTTGAGGTGTATTTGGCTGAAATCACGACTGATCAGCAAACATGTGCCAAGAGAAACATCCATGGACGAACACTAAAGGATATTTCAAAGCTGTCCGGTGGCTGGGAGTCTGCACCGCCTCATATGGTGAGACTAGATATCAGGTCTCTTCTGCAGGATGCAGCAATCGAGGATGTGGAGATGGAAGACTTCAACCCATCCGATGAACCAAAAGCTGAAGTGAAAAATGATGACGATGAGACTGATCTGGGATACGTTCCGAAAAGCAAATGGGAGATGGACACTTCAGAAGCAAAGCTGGACAAACTGGATGGTCTGGTTGGCGGAGGCAAGAGAAAACGGGACGCTGGATTGTCCGGCATGGAAGACTTTCTTCAGCTGCCTGATGACTATGCCACTCGCATGTCTGAACCTGGCAAAAAGAGGGTGCGCTGGGCTGATCTTGAAGAGCAGAAGGATGTCGACCGAAAGCGAGCGATTGGTTTTGTTGTCGGTCAGACAGACTGGGAAAAAATCACGGATGAGAGCGGCCAGATTGCTCAGAGAGCTCTCAACCGCACCAAGTATTTTTAGGAGATTTTGTAATGACGTATGTACAGAGTTAAGGgtCACCAATTCATGAAATCTTCATTAAAGTGTGCTGCCTGATGAAGAAAGAGCATCGACTCTTCAGAAGCGGGCACTTAGTCATCGGTCGATCctgtaataaacaataaatggCCTTGGTATAATATTTGAAATACTGTAAATCTTTTCTGTTTTATCCAGTCTTATTTTAATAGGTTACACTTTCTGTGATGTTTTGTAGCAGTGATGCATTTGATTGTAggtgttctttttattttatttcattgatcTAGTTTGACCTTGACATGTTATTCTTGTAGTTTACACACATGTATGCACTCAATAAAGCTTACAAAACAGTCTCGTAATAAA

Function

GO:

id name namespace
GO:0032204 regulation of telomere maintenance biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-030131-2196 Predicted to be involved in regulation of telomere maintenance. Predicted to be active in nucleus. Orthologous to human YLPM1 (YLP motif containing 1).

Ensembl:

ensembl_id ENSDART00000133012

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035348 lncRNA downstream 337207 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 850987 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 1219119 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 1533649 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 1961105 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036798 lncRNA upstream 882900 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 919771 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 1153526 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 1153526 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00036799 lncRNA upstream 1785201 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00035351 mRNA downstream 49005 9093366 ~ 9123296 (-) False XLOC_017916
TCONS_00035352 mRNA downstream 49249 9096196 ~ 9123052 (-) True XLOC_017916
TCONS_00035350 mRNA downstream 77196 9058679 ~ 9095105 (-) False XLOC_017916
TCONS_00035347 mRNA downstream 728876 8138315 ~ 8443425 (-) True XLOC_017913
TCONS_00035346 mRNA downstream 807057 8138315 ~ 8365244 (-) False XLOC_017913
TCONS_00035355 mRNA upstream 47537 9241794 ~ 9278252 (-) False XLOC_017918
TCONS_00035356 mRNA upstream 47553 9241810 ~ 9273669 (-) True XLOC_017918
TCONS_00035357 mRNA upstream 227191 9421448 ~ 9428021 (-) True XLOC_017919
TCONS_00035358 mRNA upstream 234708 9428965 ~ 9462433 (-) False XLOC_017920
TCONS_00035359 mRNA upstream 234709 9428966 ~ 9436521 (-) False XLOC_017920
TCONS_00035349 other downstream 235297 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035340 other downstream 753244 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035337 other downstream 1178217 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035333 other downstream 1543030 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 2100690 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035364 other upstream 449808 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035367 other upstream 558274 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035370 other upstream 582922 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035371 other upstream 712011 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035374 other upstream 859148 10053405 ~ 10053701 (-) True XLOC_017928

Expression Profile

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