RNA id: XM_021614027.2


Basic Information

Item Value
RNA id XM_021614027.2
length 7790
RNA type mRNA
GC content 0.43
exon number 6
gene id mpz
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81711167 ~ 81743458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACCCTGGGACAGTAGGGttctgttgttgtcctctgtcctggcaccctgcatcactctgtcctatctctccatccttctccatcgCTACATAGTGGGACTCCTCCATCTGCAACATCCCTTTAGGAACCCAAAGAGTCAGGAACCATGCTCACCATTTTGGCGCTAGCATCGGTCATACTGCTTGGAATagTGCCCCAACAGTCGGAGGCCATCGTCATCTACACGGGCTGGGAGCGTCATGCCCTGGTGGGGTCAGACATCCGTCTGTCATGTTCATTCTTCTCCTGGCGCTGGACTTCCGATGACGTCACCTTCTCCTGGAGCTACCGGGCCGACGGAGCCAGGGACAGCATCTTTGTCTTCCACTACACTGGTGGATCCCCCTATGTGGACAACAAGGGACCGTTCAGAGACAGGCTGGAGTTTGTGGGGAACCCTGGTCGCCGGGACGGATCCATCCTACTCAAGAACCTGGACTACGGAGACAACGGCACCTTCACCTGTGATGCCAAGAACCCGCCTGACATAGTGGGACGCGCCTCCAGTGTCAGACTGCTGGTCTTTGAAAAAGTTCCCATCCAGGCCGGAGTGATCACAGGGGCCATCATCGGTGTGGTGCTGGGTCTGTTGGTGCTCGTCGTGGTCATCTACTATCTCATGAGGTTTCTGGTGGCCCGCAGAGTCTTCAACCTCAGTGTCAGCAAACATGGAAAGAAAGGGAAGGGTAAAGAGGGATCACAGCAGAGACAGgTCCCTGTTCTCTCCATCGGGGACCCGTCCAAGCTGAAGGCCGCCGCCTCAGAAAAGAAGAAGCAGGAGTCACGCAAGGATAAGAAATAGGATACGGAGAGCAGAGAGCTAGAGCCCCAAAACACAGCCCACACAGCCCAGCACAAAGCACTGAGACAGCCAGGGAGAGCAGGAACAGGGGGAGGGGACTCACCCAAGGGGGAGAGGCCTGACAGGGTGCTGATGACCATTGAGCTGGAGCTCTCCAAGGGGGACAAAGGGGGGAGGGGAATGGGGGTGGGTCTGCCTCAGCCAAATCAGCCAGTTTCCTGTCCCAGCTCGCCAAAAAACTGACCCTGAAATAAGTGAATGAGACGGACAGGGGTTTTAAACGGAGGACGATACTGTCTGAAATCAtactggagagagaggcagaggagggtctGAGAGAGGCGGTCCTAATGAACTTAAAGGCTACGTCtcaaatagtaccctattccttatatagtacactactttagaccagagccctataggtagcagtgcactatatagggaatagggtgcagtttgGGAGGCAGAGTAAGTCTGTCTAGTACAGTATATTCCTTCCCACGAGATCTAAGCTTTTACAACTGAAACGATCATCATTAGGGTCTTAATGCCACGCTGAGGAGAACATAGACACAATACTGAGGTGAATATGGACGCAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATAGACACAATACTGAGGTGAATATGGACGCAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATAGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATGGACACAATACTGAGGAGAACATAGACACAATAGTGCTTCCAAAAGTATGATAAGTCAATGAAAGCCCTCCGACTACTAACTGTTAGTGTCTTCTGGATCTCATCACCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACACCTGACTGCTGGTTGGATAACAACACCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAATATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACAACATCTGACTGCTGGTTGGATAACATCTGAAAAGCTTTGTTTCCATCCTGTCATTGTAGATTTGATGCAAGGCAGTATTTCTCTACCACGTCTGTCTGACACTCATCACAAGGGTCCTGGATACAGGGACAACCCAATTTGTTATTTccagctgtgtcccaaatggcatcttgttccctacatagtgcactctgggccttggtcaaaagtagtgcactgtgtaaggaatagggtgccatttgggagacagtCTGCCTTCCCCCTCACACTGgcgttctctctttccctttcctccTTTCAGTGGAACACTTTGCATTCAGACTCTTCTTATTGAAACAGTTCAAGTGGTTTTAAAAACTTTTAATGCTAACTCTTTCACATCCTCTCTTCCCTATTtatgttcccctctctctctttccccctctctctcccctcccactcGCTCTATttccccctgtctctttctctctctcccctgtctctttctctctccccctctctctccccctgtctctccctctctctcaccctctccccctctctccccctctatctcatttcccttatctctttctctccaataGATTTTATGAATCTTATTTCTCAAGGTCTTGATTTCCTTCCACCTGACTGCTTCAGCTTCCATAGACCACACCCCTTTAGACCGCACCCATCTAGACCACCCCCCCTTTAGACCACACCCCATTCAGGCCACACCCCTTTCCCCATCTGCTCCACCTCCTGAGTGCACTTGTCCTATCTCATTAAGCCCTATGAAAGACTAGTCCTATCAAACTCAGTGTCTCCTCTGTAGAATATACAACACATAACCCCTCCAGCTAGCATCAAGTAGAGCTGACCCAGTATAGACATGCAGTGTAATATATGGACCCTGCTAATGTAGAGATACTAATGGCTTCAGGGAGGGGTCAAATAGTTCCTGAAATTTCTATTAAGGTTTCCTGCTGCTGGTTGCTTAGCTCAATGGCTCAATCAGATCAGATGAGAGTGGTGCGGAAAGAGAGTGTGAGTGCACCCTGCACTGACGAGTCAGACGAGTCAGAGAAATATGATTCCAAGCTCTTAGCTTGTGTCGATGGGTTCAACCCGTAGTTCATTTCACCGGGTGATTCAATCCCTTCACATTTGAGCTAATGGAGGTCATAGTTCTACACTGGGCTGTGCTCTGCTGTTTGGCTGTCAGTGCATGCTGAAGGTTAGGTTATTTCTGGCTCCATAAGGGCGTATACAGGATTACTGTAACAGCTGCAAAACAGGAAAACACTTGTTTGTTTATGACTGAGAGTATGTCCCAAATATCATTCTATTCTCTCTGTTGTTGTGACTGAGAGTATGTCCTGAATGGCACTCTATTCTCTCTGTTGTTGTGACTGAGAGTATTTCTTGAATGGCACTCTATTCTCTCTGTTGTTGTGACTGAGAGTATGTCCCAAATATCATTATATTCTCTCTGTTGTTGTGACTGAGAGTATGTCCCAAATATCATTCTATTCTCTCTGTTGTTGTGACTGAGAGTATGTCCCAAATATCATTCTATTCTCTCTGTTGTTGTGACTGAGAGTATGTCCTGAATGGcactttattctctctgttgTTGTGACTGAGAGTATGTCCTGAATGGCACTCTATTCTCTCTGTTGTTGTGACTGAGAGTATTTCTTGAATGGCACTCTATTCTCTCTGTTGTTGTGACTGAGAGTATTTCCTGAATGGCATTCTATTCTCTCTGTTGATGTGACTGAGAGTATGTCCTGAATGGCATTCTATTCTCTCTGTTGTTGTGACTGAGTCCATGAAATGATGTCACATTGACAGCCAGTGGACATTCTCAGGCCATGACAACAGAGGGATACCAACAAGTGATTCATCCTTATACTCCTCCAGGTTATTTTGGTCCCGTTAATCCCTCCTGCATGTGTCTCCCTCACTCAGATCATTATTTTAGCACTTGCTGGCaactggatctctctctctctctgtctgtctctttctctctctctctctttctctctctttctctctctctctctttctctctctttctcacacacagacacacactctctctctatcctttagTGACACTAAACTATGTTCCCTCATAGATTACCCAATCCACTCTCCACTCTATACTTAAGTCTCTTCTATCTGTATAGATACAGACTGAATCAGATGTCTTCTATCTGTATAGATATAGACTGTATCAGATCTACTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATACAGACTGTATCAGATCTACTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATAGACTGTATCAGATCTCTTCTATCTGTATAGATATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGatctattcaatctgtatagATACAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGACTTCTTCTATCTGTATAGATACAGACTGTATCATACCTCTTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCATATATATTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATACAGACTGCATCAGACCTCTTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATACAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGATCGATTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATACAGACTGTATCAGATCTATTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGATCTATTCTATCTGTATAGATATAGACTGTATCAGACCTCTTCTATCTGTATAGATACAGACTGTATCAGACCTCTTCTATCTGTATAGATATAGACTGTATCAGACAAAGGCAGACCCGTCTCAAACAAACTCAGCAGttctttatttttcttcttcttcttcttcctcctcttcttcctcctcttctctctttttcaAACTCAGTGAtggacacctctcctctcctccacccccctgaTCACCAGCACCCCTCTCACTCCCCCACCAATACCACCACACCCCTGCACGTTCATTCACCCACCATTTCTGCTGGTTGGAATGCCACGTCGCTGTCTTCTGCCCAACTATTGGCCAGGGATGGAAACAGAATCATCCTCGTTAGTTCTCATTGAAGACTTAAATTTAGCTTATAGCTCTCTGCCGGTGGCAAaagtgtgtgttttatgtgtctgtgtgtctagtcagactgtcatgtcaaacaaaagatgaggggaaaaactgtgtatatgtgtgtcacCCTAAAGTAAATAGttacacatttacatttgactTTACATGTGCACGAAAATACATGGAGACCATGTTTTGTTTGAGAGAGGCAGACATGTGATAGATCTTCTTATGACATTTAATCACATTTCTGCCCTTGTATCTGGAGGGGGATTCTGTGTGGCTGTTCATTTCTTTGTGCATGTTTTCCAGGTGTGGAAAATAACATAATTTGTCATTTCAGGTGTTGGTAAACTGCATGGGGCTACAGGAGGCACTGACACAGTGAGGGGGAGATTATGGGGAGGACAAGGGAGGTAAACTTCACATGTTGTCCGTGGTAATGAGATTAGAAAAAAAGGAGGTTGTTGGGATGAAGATACTTTGGCGAGAGAGACTTATCTTGTGTGTTAAGTCAAACCAAAGTCCATATGTATCAGTAAAGATAAGGCCTCAGCTTTCTCTTTCAATATCCTTACCCTGAGCTTCTGTTCTGAAGGATTGTTAGGCTATGCAAGGTGGTTAGTGTAGTTCTGAACGCTTGATAGGCTATGCATGGGGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGATGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGATGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGATGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCAAGGTGGTTAGTGTAGTTCTGAACGCTTGATAGGCTATGCATGGGGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGATGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCAAGGTGGTTAGTGTAGTTCTGAACGCTTGATAGGCTATGCATGGGGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGATGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCAAGGTGGTTAGTGTAGTTCTGAACGCTTGATAGGCTATGCATGGGGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGATTGTTAGGATATGCATGGTGGTTAGTGTAGTTCTGAATGCGCTCTGTTCTTTTAGCTGTGGTCATAGGGAGGGAGCTAGTGTGACGCACACCACGGTTCATTAAGGCAACAGGAACTAGATATCTCTGTTTACCTCAATGCTGTTTAACCAACTATCCATCATCAGATGTGAgtagtttgaatgtttctttcatTCCTCTTTCAGTACGGCCACACAGACTCCTGATACAATActacaaactgcattaaaatgtCTTCACACTGTTTTGTTGGATGTATAGTTTGTTGTGTACTGCATTAGTTTAGGTTGTTAGATAACATTCCTGTCTTAGAAATTTTAAGCGTCTTacattttttagtttttttttaatgcttATAATTGAAGTGTGCTAGTAATATAAATTCTACAGTCATGTAAAATAGGTTGTAACAataaaaattaaaattaaaatgaaAGCATCAAACGCATCTCGGTTGTATAAGAggaataaaataaactcaaataaAAAATGTCTATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855447 lncRNA upstream 19801 81690946 ~ 81691368 (+) True G753305
TU855380 lncRNA upstream 91435 81618025 ~ 81619734 (+) True G753280
TU855354 lncRNA upstream 132733 81578231 ~ 81578436 (+) True G753256
TU855350 lncRNA upstream 146165 81564758 ~ 81565004 (+) True G753252
TU855308 lncRNA upstream 201636 81509291 ~ 81509533 (+) True G753219
TU855526 lncRNA downstream 51922 81795380 ~ 81795732 (+) True G753353
TU855551 lncRNA downstream 89830 81833288 ~ 81834194 (+) True G753374
TU855546 lncRNA downstream 140314 81883772 ~ 81884563 (+) True G753372
TU855510 lncRNA downstream 174954 81918412 ~ 81929038 (+) True G753338
TU855491 lncRNA downstream 178704 81922162 ~ 81931491 (+) False G753337
XM_036986484.1 mRNA upstream 18757 81666646 ~ 81692412 (+) True lig1
XM_036986481.1 mRNA upstream 45895 81636670 ~ 81665274 (+) False LOC110530761
XM_036984507.1 mRNA downstream 3342 81746800 ~ 81779970 (+) False atp1a2a
NM_001124458.1 mRNA downstream 3462 81746920 ~ 81779467 (+) True atp1a2a
XM_036986487.1 mRNA downstream 39824 81783282 ~ 81801568 (+) False sdhc
XM_036986486.1 mRNA downstream 39840 81783298 ~ 81802285 (+) False sdhc
trnar-ucu-2 mRNA downstream 62090 81805548 ~ 81805621 (+) True trnar-ucu-2
TU855294 other upstream 223559 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 969224 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1077117 80631310 ~ 80634052 (+) True G752357
TU852726 other upstream 2141292 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 2363721 79345437 ~ 79347448 (+) True ncana
TU855521 other downstream 39891 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 178704 81922162 ~ 81926159 (+) False G753337
TU857445 other downstream 1512281 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1885914 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1909587 83653045 ~ 83654438 (+) False G755277

Expression Profile