RNA id: XM_036986489.1


Basic Information

Item Value
RNA id XM_036986489.1
length 2158
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110511052
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81808453 ~ 81922125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCTTTCAGACAGACTGTTTTTGCTGCAGTAAACGGTagccgtggagagagagagagggaacagctaGAAAAACAACAATCCGAAGAAGGAAGGAAAAAGTCAATATAGACAGATCCAGGGAGGCATCAGAGCAAGCGCCAGTTTTCCTGCAATACAGGGACCACTTCCAGAACCAACGGTGACAAATAGCCTATCCGTTCAGGATCGAGAATCCAGAGGCAGGCCTATTTCGGTAACGAACACTCCGGTGCTCCCCCCGCAGGTAACACTCCCGTGCTCCTCTCCCCTGCACCCTGCCTAAACCTCCCGAGGATTGAGACGAACCAACCAACCATGGCATTCCCTTCTTACCTGGTCCCAAATCTATGGACTCTGAGTTTATTGACACTACTGGCAGCCTCTGTTCAGAGCAACTTCATTGTCTTTGACGATGACCCCTTGCAGCCGGTGACCCAGGACGAGACGGCGTCCGTGGGCGGCATGGTAACCCTGACCTGCCGGGTGGCAGCGAGTGACAACTCCTCCCTGCAGTGGTCCAACACAGCCCAGCAGACCTTGTACtttggagagaagagagctctgaGAGATAACCGTATCCAGCTCAACCGGTCTACAGGCACAGAGCTGTCCATCACCATTGGAAATGTGCAGCTGTCAGACGAAGGAGAGTACACCTGCTCTATCTTCACCATGCCTGTCCGCACTGCCCGCGCCACCGTCACCGTGctagGGGTCCCTGATAAGCCCCAGATCTCTGGCTATGAAGACACTGTCCAGGAGGGGGGTAAGGTCACCCTCACCTGCACCAGCTCCGGGAGCAAGCCCCCCGCCAAACTACGCTGGTACAGGAACCAGGAGGAACTTACAGGTCGTCCTGACGTGGTGGAGACTAATCCAGACGAGGCCACCTACACAGTGATCAGTGAGCTGACTCTGACGGTGGGTCGTAGCGACGACAACACCCTGATCGGCTGTGCTGTTGACCACCCTTCTCTGTCCCCGGGTGAGAAGTGGACCGAACAGCCCATCAGAGTCCTGTTCACCCCAGATGTCACTATCCAGCCTCAGAACGATCtgcccagagagggagagaagttcATTATACAATGCATAGGCAATGGAAACCCGAagcccACCTCGTACGTGTGGCAGAAGAAGGATGGAGAGCTCCCTCTGATGGCCAAGGTGGACGGTAGTTTCCTGCTCTTTGAGATGCTCAACAAATCAGACAACGGGGTGTACCTCTGTCAGGCTGACAACGGAATCGGGAAGATGCAGGGAGAGTACACACTGCTGGTGCAAGACCTGACAGATGATTCAAACAACCTCTTCCCTACCTCTTtctatctaccctcctcttctccaacctctgactccccctcttcctctctctctcctgattctTTCCCCACTCTTATGTCAACAACGTCTGGGTCTGGCTCGTCTGCCTACGGGTCCCTACCTGCCAACTCTCCTCCCACTattttctccttctctgtcccgTCTGATCTCACCTTTcccccttcttcttcctcttcttcatccctctctacctcttctctctctccctctcctcctcctgtcaatGTTCTATCCACCTCTCTTTCCAACTCTCTCTTCCCTGACCTTTCCATGTCTCCTGAACGCCATCCCCCCTCCTCtgactccttctccccctcttcttcctcctctttttcctctcctcctgccaGCGTTACTCCTCCCTCTGTCGCTCCTCCCTCCTCcgactccctcactccctcctcagTTACCATACGGCTGAATGGAGTTTACAGTTTCACAGATGGTCCAGACAACATTGCAGACCCCACTGCCATGTCGACCTCTTCAGGAGTGGACCATGCTGTGATTGGAGGAGTGGTGGCGGTCATCGTCTTTATCCTGCTTTGTCTGCTTATCGTACTGGGCAGATACCTCATCAGACACAAAGGGACATATCTTACCCACGAGGCCAAGGGCTGCGACGACGCTCCCGATGCCGACACGGCTATCATCAATGCCGAGGGCGGCCATTCCGGAGCTGAGGACAAGAAGGAGTACTTCATCTAGGGAGGCATCGGGGAGGTGGAAGTTTAGCGCTTCCATTTGTCTTCACAAGCTTCTGTTCTTCACATCagccagagggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855526 lncRNA upstream 12721 81795380 ~ 81795732 (+) True G753353
TU855473 lncRNA upstream 77877 81726479 ~ 81730576 (+) True G753322
TU855471 lncRNA upstream 83069 81720431 ~ 81725384 (+) True G753321
TU855468 lncRNA upstream 93402 81713647 ~ 81715051 (+) True G753319
TU855447 lncRNA upstream 117085 81690946 ~ 81691368 (+) True G753305
TU855491 lncRNA downstream 37 81922162 ~ 81931491 (+) False G753337
TU855507 lncRNA downstream 7021 81929146 ~ 81931491 (+) False G753337
TU855508 lncRNA downstream 7021 81929146 ~ 81931491 (+) False G753337
TU855495 lncRNA downstream 8080 81930205 ~ 81931491 (+) False G753337
TU855498 lncRNA downstream 8080 81930205 ~ 81931491 (+) False G753337
trnar-ucu-2 mRNA upstream 2832 81805548 ~ 81805621 (+) True trnar-ucu-2
XM_036986486.1 mRNA upstream 6168 81783298 ~ 81802285 (+) False sdhc
XM_036986487.1 mRNA upstream 6885 81783282 ~ 81801568 (+) False sdhc
XM_036984507.1 mRNA upstream 28483 81746800 ~ 81779970 (+) False atp1a2a
XM_036986492.1 mRNA downstream 24067 81946192 ~ 82034520 (+) False kirrel1b
XM_036986493.1 mRNA downstream 24067 81946192 ~ 82034520 (+) False kirrel1b
XR_005052972.1 mRNA downstream 182975 82105100 ~ 82108513 (+) True LOC110530760
XM_021614022.2 mRNA downstream 315591 82237716 ~ 82252379 (+) True LOC110530764
XM_021614033.2 mRNA downstream 391169 82313294 ~ 82320766 (+) True LOC110530769
TU855521 other upstream 6168 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 320843 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1066508 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1174401 80631310 ~ 80634052 (+) True G752357
TU852726 other upstream 2238576 79548497 ~ 79569877 (+) True LOC110530726
TU855496 other downstream 37 81922162 ~ 81926159 (+) False G753337
TU857445 other downstream 1333614 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1707247 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1730920 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 1730920 83653045 ~ 83654438 (+) True G755277

Expression Profile