RNA id: XM_036986493.1


Basic Information

Item Value
RNA id XM_036986493.1
length 5173
RNA type mRNA
GC content 0.51
exon number 15
gene id kirrel1b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81946192 ~ 82034520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGTGATTTGGAGAAGCCTAGTCTAGGCTTTGGGTACGTTCTGTGGTGATTCTgtagagagaggcagcgagaagaagagagaggaattcACTCTTTAATGAGTGTACGGCTGTGCACGCAGCCAGAGAAAAGAGACTGAGAACGAAGGGAAGGAAGTCAGAAAAAAGTGGGGATAGATTTGAAGCACAAAACAAGTAAAAGCCAAGGAGGGACACGGACCGGAGACGAAACAAACCGCTGCAATTGACAATCAACCAAAAGATTGCTAATTATCTCCGTTATTGACGCGTAAACTAGGCTATTTCTAGGGGAATTGATGGTGTCTCCACAGAGCAGAAGTCTAACGGACCTTGCCGAGGGGAGGAATTCGAATGCACTCGGCTGAATCATGCTGATGTTGTTGTGGATAATAACTTTGGGTATCAGTTTTAACAAAGTGTGGACTGTGAGGTTCTCTCAGGAGCCAGCAGACCagtctgttgttctgggggggCGGGTGGTTCTGTCCTGTGTCGTCTTCAACTACAGCGGCATCGTACAGTGGACCAAGGATGGACTAGCACTGGGCATCGGAGAGGGCCTCAAGgcctGGCCCAGGTACCGTGTGCTGCGGGTGATAGACGTGGGCCAGTACAACCTGGAGATCTCTACTGCTGCTCTGTCTGATGACTCCCTGTATGAGTGCCAGGCCACGGAGGCTGCCCTGCGCTCCCGGAGAGCCAAACTCACCATCCTCATTCCTCCTGATGACCCAGTGATCGAGGGCTTTCCAGAGATCCTGCTGAGAGCCAATGCCTCGTACAACCTGAGCTGTGTGTCCCGCGGGGCCAAGCCACTGGCCCTCATCGAGTGGCAGCGGGATGGGGTGGCCCTGGAGGGAGCCTTTAGTACCACCgAGGTTCTcccagacagaaagagagtgacgACCCGGAGCTTTCTACCCATCATCCCAGAGGACAAAGACACGGGACGCAACTTTACCTGTGTGGCCAGCAACCGGGCTGTCCCCATGGGAAAACGCACCACCGTCACACTCAACGTCCACcaCCCCCCCAAGGTGAATCTCTCCATGGAGCCACAGTCTgttttggagggagagagagtcacctTCTCCTGCCAGGCCACCGCCAACCCCCCCATCATGGGCATCCGgtGGGCGAAGGGTGGTGTTCTCCTGGAGGGGATGAGAGACAGTGTGTTTGTGACTACAGCAGACCATTCCTTCCACACCGAGCCTGTCTCCTGCTCAGTCTTTAACGCTGTGGGACACACCAACCTCAGCATCCTGGTCAACGTACACTatggTCCTATCCTGAAGGGGGCGCCCACGCCGATTACGGTGGACATTGACTCTGACGCCAAACTCAACTGCAAGTGGACCGGGAACCCTCCTCTTACACTCACCTGGACCAAGAAGGGCTCTAGCATGGTCCTCAGTAACAACGAGGAGCTGGTCCTGAAGTCAGTGAGCCAGGTGGATGCGGGGCAGTACGTGTGTAAGGCCATCGTCCCCAGGATCGGAGTGGGAGAGACTGAGGTCACTCTTACAGTCAACGgccCTCCCATCATCTCCAGCGAACCAGTCCAGTACgcaatgagaggggagagaggggaggtcaaGTGCTACATTGCCAGCACCCCTCCACCTGACAAGATTGTGTGGGCGTGGAAGGAGAACGtgtgggagaaggagaaagggactCTGTTGGAGAGGTACACGGTGGAGCAGAGTAAACCTCACTCCCAGGGAGGAGCTGTTCTCTCCACCCTCACCATCAACAACGTCATGGAGTCTGACTTCCACTCTCCGTACAACTGCACCGCCTGGAACTCCTTCGGACCCGGGACCATGATCATCACCCTGGAGGAGAAAGAGATAGTACCAGTGGGGATTATAGCTGGTGGAACAGTTGGATCCTCCATCCTGCTCCTGATCTTTCTCTTGGCTCTAGCCTTCTACCTCTACCGCCAACGGAAAGGCAGTCGTCGTGGGGTCACTCTGGGGAAGCCGGACATCAAGGTGGagacagtcaacaaggagacacATAGTCTGGAGGAGGAATCGGGCAGTGTTTCCACGGCAACGCGCATGGTCAAGGCCATGTATTCCcCATTCAAAGACGATATGGATCTGAAGCAGGACCTGCGCAGTGAGCTCGATACCCGCGAGGAATACGAACTCAAGGACCCAACAAACGGCTACTATAACGTCCGTGCGACCACCCACGACGAGGCCAGGCCGTCTTCCCGCTCCATGCTGTACCAGGGAGAGTTCCGGACCTCCAACCCTCCAGGGGGAGCTACAGGTACTACCTCCAGTGGCCCAGCAGGGGGTCCCGGAGGGGCGGTGGCTGCAGGAGCGGTCCCAGGAGTCCCAGGGTCAAGGGCAGGGTGCTATGACCCCAGACCTCCATCCAGGATGTCTCACACCAACTACCCCCAGTTCAACACCTTCACCAGGGTGGGACCGAGCCAAGTCCCGCCCAACACCAACCACCCCGCCCACCCCTCCCACCCCGCCCATCCTGCCTCACAGACCACCGACTTCCCCGGAGACTGCGGACTATTGGACAACAACAGTCAGCTGACCTATGACAACTATGGCTATCCCGCCCAGTACCCTACCTATCGGGTGGGCTTTGCCCCGCCCCTGGAAGGAGGGCCGGCCTATGAGGTCTACCCAACTGGACAAGGAGTGGGACCAGGGCCAGTGCAAGGACCAGTCCAAGGCCAAGGCCCATGTCCGGGTCCTGAAACTGTGCTGGGGAATTATGGGACCACCCGCTTCTCTTACACTTCTCCTCCTAGTACTGACTACTCTCCTCCTGGTACTGACTACTCTCCTCCTGCTACTGACTACTCTCCTCCTGCTACTGACTACTCTCCTCCTGGTACTGAGTACAACCAGAGACACACTCAGAGGATGCAGACACACGTGTGAGAGAGATGGATTCTGTAATACATAGTGATGCTTGTTTTCATACATGCGTACATAcatataaacacagacacacacacaaacacacacacacacttgttggaGAGATACATTTATTCTCTCTATTCTTTCTTTatcgcatacatacacacaaacaaacgcaAACAATCTGACACAGTTTCTCTCAATCTTCAGCTCCAAGAGGGGAGACATGACAAAAGAAAGAGAGGCTGAAAGTTATTTTCTTAAACTAGGTGGGGATTCAGCAGAGTTTGAGTACTTACATGCTAATTGACAGCGTCCAGATCCATCTCTTCTCTATTggactctccacccctctctctttcctctcacacAATCTCTGTATATAATATCAGTGGGGTAGATCATTTTAAACTTAGTATAACCTTGTATAAACGTACTGTGTACAGATACAGCTGCTGAACTTTTCTCCTTATTATACACCCTCTTACACTCCTTTAAattcacagaaacacacacacacaccctcttacACTCCTTTAAattcacagaaacacacacacacacacaccctcttacACTCCTTCAAattcacagaaacacacacttacactccGTTAAAttcccagaaacacacacacaccctcttacACGTTGACAGAGACAGTGTTGCGTCCCAGCGGTGCTCAGGCAAGGCGACAGCTTGTCCTCCGTATGTGGAGCTCTTTTTAACATGCTTCTTCTCCATGCCGCCACAAACTGCTCCACCGGCATGGCCTTAGGGCTTCAAGAAGTGAATGAAAGGGAAATATGGGGGTGTCTCCCAAATttcaccatattccctatgtagtgcactacttttgactaaggctcattgggctctggttaaaactagtgcactatatagtaaatagggtgtcatttgggacacagacaaagGCATCATGGCATAACAGCCATTACACCAATATGGCGATTTGACATCTGACAAGATAGAGAAAGAATGACCTTGTGCTTGACACCTAGAAGGTACAGTGAGGTAACTCTAACCATGGTAACCGTGAGGTACCTCTCTCCATGGTAACAGTGAGGAGTATGTGTGGACTGTATGGACAATGAAATAGGGTtttgtatacagtataccacttaCAGTATGTTGAGCAACCTATAGGGGAAGAACGGAGCTGTAGCAGGCTTCTTCAAatgcttcttcctcctcctctgtattTTCTATCTCATCGCAATACATATCTACCCCACATTTCACTCATCTGAGGTCAATATGATGTGTTTGGGAAGCGGGGGAAAGAGCTTTTGTAATAAAATGAATCTTTACATTTTGTacaaattccccccccccccccccccccccccccccaccctcaaaTAGtattgtatgtgtctctgtcacTTGCACAGTAGAGTAGATCTTTCCCCATATTTATACCTAAATAGAAGAACAAGAAGCAAAAAAAAAACCAACACATTCAGAAAAGTTTTCTAGTATTTTTATAAGGGGTTTGCAGACCAAAGGTTCAGAGGTTTGGGTGACATTCACTTGTACAATTCAATGTTCTGAGGCTTCTGTGTCCAGTTTCATTCACTGAGTTTCTATTCtggtcatgttgttgttgttgttgtagactaggcctgcgtcccaaatggcaccctgtcccctacatagtgcacgacttttgaccagagccctacgggcTCACTGGCTCACCATAgagctcttgtcaaaagtagtgcactatatagggaatagggtgccttttgggatgtaGTCATGATGGTGTAGTCTTGAAACTAAAGCATCAAACTTGTAGTTTGATGCTGGCAATGGTACACTTTTGAGATTGGCGCTGAGTGACCGATGCTGGTACTGTCTGTCCAGTGGCCTGTACGAATGATATAATATTTGGTACTTTGCATTACCCCATCTGGTATTTGGCCCAGTGCTCCATAGTGGTGGATATGAAGGCCTACACACAGTGGCTCTGTAGCTGTGGGTAAACTCTGATCATGCAATTCACCATCATTATTTCACTTAGGTACGCTAATGCATAGAATGACATGTAGAACCCATACATAACATATTGGATCTTTGTGCCCTATTCTCTTtatatgggctcccgagtggcgtagcagtctaaggcactgcatctcagtgcaagaggtgtcactacagtcccttggttcgaatccagtctgcatcacatctggctgtgattgggagtcccatagggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855495 lncRNA upstream 14701 81930205 ~ 81931491 (+) False G753337
TU855692 lncRNA downstream 30512 82065032 ~ 82065394 (+) True G753490
TU855704 lncRNA downstream 47797 82082317 ~ 82086287 (+) True G753502
TU855705 lncRNA downstream 176981 82211501 ~ 82225706 (+) True G753503
TU855768 lncRNA downstream 201491 82236011 ~ 82237251 (+) True G753563
TU855789 lncRNA downstream 251580 82286100 ~ 82286542 (+) True G753584
XM_036986488.1 mRNA upstream 24067 81808453 ~ 81922125 (+) False LOC110511052
XM_036986489.1 mRNA upstream 24067 81808453 ~ 81922125 (+) False LOC110511052
XM_036986490.1 mRNA upstream 24067 81808453 ~ 81922125 (+) False LOC110511052
XM_036986491.1 mRNA upstream 24067 81808453 ~ 81922125 (+) True LOC110511052
trnar-ucu-2 mRNA upstream 140571 81805548 ~ 81805621 (+) True trnar-ucu-2
XR_005052972.1 mRNA downstream 70580 82105100 ~ 82108513 (+) True LOC110530760
XM_021614022.2 mRNA downstream 203196 82237716 ~ 82252379 (+) True LOC110530764
XM_021614033.2 mRNA downstream 278774 82313294 ~ 82320766 (+) True LOC110530769
XM_036986514.1 mRNA downstream 306697 82341217 ~ 82358286 (+) True uck2b
XM_021614036.2 mRNA downstream 324683 82359203 ~ 82361901 (+) True czib
TU855496 other upstream 20033 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 143907 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 458582 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1204247 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1312140 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 1221219 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1594852 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1618525 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 1618525 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 1623577 83658097 ~ 83660046 (+) False G755298

Expression Profile