RNA id: XM_021614022.2


Basic Information

Item Value
RNA id XM_021614022.2
length 2999
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110530764
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82237716 ~ 82252379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAGTATAGGCCTATGTGACAATACTTCCTCATTTAGGTTTAGTAATTTATCAAAGTATGGCGACCTTGTGTTTCCCCATCGCTATTCTACTAACTCTCCTCCATCAAGCAGAGCCCAGTGCTGAGACCTCTGTGTTTGTGCTGAAGGGACAGGATGTTCGCCTGAATGTCCAGACAAATGTTCAACTGAAAGAAGATGTTGATGTGCTATATTGGAAGTTTGACACATCAGTCAATGTTGTAAAGTACCCCCCAAAAGTTACCTTTGAAAGGTACCGAGGTAGGGCTGAATGTAGTGAGGAAGACTTCTCTCTGCTACTGAAGAACCTCCAGGAAGAAGACAGTGGACTTTATGAAGCAGTAGTGACTGGTAACAATGACAGAAACGTTGCTAAATACTTGATAAAAGTCCAAGAGAGAGTTGAGCCTCCAGTCCTGACAGTGGACTCTGTCTCCTCCATCAATGGCACCTGTAACGTGACTGTGGCCTGCAGAGGTCAGAACACCTCTGTCAACTCCAGCTGTAACAGCAGCACCTGCTCtcaggtgggaggagagagaagaagggctGAGACAACCACTGTCCCCCTGCTCTCTGTCTATGTGGCAGGGGGTTCCATCATCTGTAACCACAGCAACCAAGTCAGCTGGGCCAACGACACCAAGGAGATCAAAACAATTTGTCTGGAAAAAGAGCGGGACAAGGAGGACCATAACTACGCTGTCACAGTCGGGATGCCAGGTCCCATCATCCACGTCATCATCATCTTTGTTGGATGCGCCTTGATTGGTTGGTGAAAGCTAAATAAAGACTCCAGGTAACAGTCATGTAGGTGGTGAAGAGCAGGAATCTCCAGGTCCAGCATCACCCTCCATCTACAGTATGGTGGGactaccccaaccccagcctaTGAACCATTCCACCATGATGGGAGACCAGTCTCCACCTGAGGACTTCCCCATGACCTCCATGACCATGCCTGAGAGTTTAAATGCTACTGTATGGTGGGGGAAAAAGAGAAGCAAACAATAATCAGGAATTTTAACATCATCTTAGACCAGGATTCTATCACATAGCTTTTTGTCAGCTATACACCTTtgaaggcaatgttcccgcgttcACTGAGAAAACATTCAATTCAGTTCAGTCGGGAAATTGTGTTTAAATGTACATAGCTGACAAACCATGATCAAATTGAATCTTGGCCTAAGACCGCGTAATATCTGTGCTGtagcgtgattgaaatttaaaggcaatgtacCTGCTTGTGTGGGGACTGCATCGGTAAACTCTGCaaatgtcggctcaatcggaaatgacctttacatttctatcgtGCTACAATTCGGATATTCTTCCAAACAACGATCAACTACAGatgaaggatcttaatttgaccacactgttgttgcaggaaatgcaaacttgtagtgcatTCGAGGTTTAAAAATGCTTCTAAAGTTTGGAATTTACACTTTAAAATATCAAACTTGATTTGCCAATACAAAAAATCTAAAACCTACACAAACATTTTCATTCATTATATCCCCATAATCCTGATGCTTCAggatattttcctgctgtgagaaactggtcaaattaagatcctacatctgtaagcaCAGCTGTCTTTgaaaatgttaaatatatttttttttccctTGTAAATTTTTTTTAACCATCATGACGGTAGTATGCTGTAAAAGTACAGAAAAATAAGTGAACATTTCAAATTATTCATCATAGTGGGTATTAAACAGAAACAAATCATTAATCATAGTGGGTATTAAACAGAAACAAATCATTAATCATAGTGGGTATTAAACAGAAACAAATCATTAATCATAGTGGGTATTAAACAGAAACACATCATTCATCTTAATGGGtattaaacaaaaacaaatcatTTATCATAGTGGGTATTAATCAGAAAAAAAGAATGTGTAATGGTCGGTATTAAACAGAAACAAAACTTTCATCATGGTGGGTACTAATCAGAAACAAATGAGCCAAAAACATGTGATACTGTATAGTCAGATATTCTTATATCATGTTATGCTGTGCATTATACTATGTCATGTAATGCTATATTATGGCAGGCCCTAATAATATGCCTTGAAATGCTATGCTATCTTACATTAGGCTAAAGACATGCTACGGTACTTTGGCGACTGGTAAGTGTTTTTTTCCTTTGGGCTGTATGtttcaatgtgtagttcatacatgcataatctatacGCAGAATTAACGTTTTACCTCAATAAGCAACTGTTGTCTGGAAGCTGTGCGGCACCATTTTCCCTACATTTACCTCAACGTGCGCCAGCCCGCTAGAAATTCGAGTttcagccaatgagcttcagccccttgccatttgagtgacagctagacacacacagcagagcgagagagagcaatgaaGTGTTACACATATCTGCACATTTGTTGGAGTAGCACGCAATTTTCAGGTCCCACTTTTGGCTTGTGAGCGTTACTTTCAGAACTACTTCCTAAAAaaatataacaaataaaaaaagaatATCTAAGGTATGTTATTTTTATAGCAACAAATGAAAAGAaaaagtaaatatttttttaaacgtttTAAATTACCCAATCTGGTTTACATGTGCAGGCAACATCCTTCTGTTTCTGTGTACATTGTTACATAAAAAGGAACATAATTATTAATCTCATGATTATACTATCTGCTGctgtatggggcggcagggtagcctagtggttagagtgttggattagcagtcgaaaggttgcaaattcaaatccccgagctgacaaggtacaaatctgtcattctgcccctgaacaggcagttaacccattgttaactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaacaaatAAAAATTAAACATTGTAAATAATATCGTCACTGTGGGAAGCCCTGTCAATTGTAAAAATACAATAAACATAATTCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855768 lncRNA upstream 465 82236011 ~ 82237251 (+) True G753563
TU855705 lncRNA upstream 12010 82211501 ~ 82225706 (+) True G753503
TU855704 lncRNA upstream 151429 82082317 ~ 82086287 (+) True G753502
TU855692 lncRNA upstream 172322 82065032 ~ 82065394 (+) True G753490
TU855625 lncRNA upstream 204676 82032090 ~ 82033040 (+) True kirrel1b
TU855789 lncRNA downstream 33721 82286100 ~ 82286542 (+) True G753584
TU855790 lncRNA downstream 34200 82286579 ~ 82286949 (+) True G753585
TU855820 lncRNA downstream 113445 82365824 ~ 82366453 (+) True G753592
TU855879 lncRNA downstream 121181 82373560 ~ 82374769 (+) True G753631
TU855906 lncRNA downstream 189096 82441475 ~ 82441819 (+) True G753658
XR_005052972.1 mRNA upstream 129203 82105100 ~ 82108513 (+) True LOC110530760
XM_036986492.1 mRNA upstream 203196 81946192 ~ 82034520 (+) False kirrel1b
XM_036986493.1 mRNA upstream 203196 81946192 ~ 82034520 (+) False kirrel1b
XM_036986489.1 mRNA upstream 315591 81808453 ~ 81922125 (+) False LOC110511052
XM_021614033.2 mRNA downstream 60915 82313294 ~ 82320766 (+) True LOC110530769
XM_036986514.1 mRNA downstream 88838 82341217 ~ 82358286 (+) True uck2b
XM_021614036.2 mRNA downstream 106824 82359203 ~ 82361901 (+) True czib
XM_036986513.1 mRNA downstream 109740 82362119 ~ 82384840 (+) False scp2a
XM_036986511.1 mRNA downstream 109741 82362120 ~ 82384858 (+) False scp2a
TU855496 other upstream 311557 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 435431 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 750106 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1495771 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1603664 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 1003360 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1376993 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1400666 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 1400666 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 1405718 83658097 ~ 83660046 (+) False G755298

Expression Profile