RNA id: XM_036986514.1


Basic Information

Item Value
RNA id XM_036986514.1
length 2408
RNA type mRNA
GC content 0.42
exon number 8
gene id uck2b
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82341217 ~ 82358286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGAGCTCAGCGGGACACTGTATTGTTCCCAGCTGCGTTGTTGTAGGCACGTTATTGCAAGCATGGCCGGGGACACTGAAACACATCTCAGTGACTATGCCGAAAATAACAACGTTATCCGACAACCATTCCTTATCGGAGTGTCCGGAGGCACTGCCAGTGGCAAGTCGTCGGTGTGTGAGAAGATCATGGAGCTTTTGGGCCAGAACGAAATCGACCACCACCAGCGACAGGTAGCCATCCTCAGCCAGGACAGTTTCTACagagagctgactccagaacagaAGGCAAAAGCACTCAAGGGCCAGTTCAACTTCGATCACCCAGATGCCTTTGACAATGAGCTGGTCATGAAGACTTTGTGGCAGATCATGCAGGGGAAGACCGTACAGATCCCTGTGTATGACTTTTTCACCCATTCCAGGAAGGATGAGTTTGTGACTGTGTACCCGGCTGACGTGGTGCTGTTCGAGGGCATCCTGATGTTCTACTCCCAGGAGATAAGAGACCTGTTCCAGATGAAACTGTTCGTAGACACGGATGCAGACACGCGGCTTTCACGCAGAGTGCTAAGAGACATAGGTGAACGGGGCAGGGACCTTGAGCAGGTTCTTACTCAATACATCACATTTGTCAAACCTGCTTTTGAGGAGTTCTGTCTTCCAACTAAGAAGTATGCTGATGTGATCATCCCTCGTGGAGCAGATAACTTGGtggcAATAAACCTGATAGTACAGCACATCCAGGACATTCTAAACGGCGGACTGACCAAGCGGCACAGCGGCTGCATGAACGGGCACAGCACGCCCGCCCGGCAACGACAGACCTCAGAGTCCAGCAGTCGCCCTCATTGACCTCCTTTGTATTGGAGGCAGAGTGTGATTAGATCTGTACATAATTCCCCAATGGCATTGCTGTATTTAAGATGGAGGAAGGCTACGTCCTGATTCTCTACCCTGTTACCAGagtgtgcacttgcacacttCTGGTCGTTGTAGGAGAAGTGTAGAGAATTGGGACGCAGGCAAAGAGTAACTACCAtgcttattattattactgttattattattactactactgttattacaGGTACTTTTATTGTAATTGTTGGATTTGGTTCAGGCGGGGGGAGAGAACCTCCAGTTTTTGCAATGAGATCATGTGTTAAGAATGACCCCCTTTTTGTTTTCATCCGTTTATTTcaaatttgtatttcatatagtTTGCTTTTTGACAGATTTAATCAAATGTGGAAACTGGTGTTGTCCAATGAGAATTAAACCCTAAAATCACAGGCTGGGATCTAATTCCTCATTGAGAAAAATGTCGGACCTTGAAATGGGGATGAAACTAGACACAAAGGTGAAATGAGAACTCAGGATTTGCGCTCGTTGTTCGTTCTCGTTGACAATCTTGAAATAGGTTTTTCctaccccttttttttttttttgtcggtCTTATCGTGTTTTTCTAGTCTGTATGTTCCGTTCCCTAGTTGAGGTGCCTTTTGCCTGTCACTTACCCTCCACCATTTGCTAAGCTACAGAACCTCCACAAGAGGGAAGTTCCAAACTCCATGACATTCTAAATTCTAAATTCCACACAGAATAGGTAGGTTGAAGTAAGTAAAGAAGTAGTAACAAAGGTTGAATATTCTCAAACAAGGGTTCTTTATTATGGAAGCCCAATTTTGGTGTTACTTACCTGACAACGGTGGTATAGTTAGCTTGGGCTGACTCGTCCTGCATGATATCTTGTGTATTTCCTGGTGGTGGAAGCCAAATACAATCTCATTGTCAACACAGTAAAGTGTTACGAGTGCTATAACACAAAATAGAAATTGTCAGGTTAATTGATTAAACTTGCACAAGACCTTCAACTATTTGCATAAAATGCTTTTCCCTAATTAATCTTGAAGCAGAATTAATTTAACATTTTGAAGAATTAAACCTATTGGAGTTTAATTTCCCCTAGTCATTTAGTAATTGTTCATTCCTAATATATTCCTAATACTGTTTTCTCAGGTTGACAAGAGTACCATTGAAGTGCAGAGATATTATTAGTCAAACTGAGGGAAGGGTCCCATAACAGCAATACACCTGAATTACACCTGAATCATTATTTTTCTGACAAGACTTGAAAACATGAAACCAGCACAATGCCTTTTCGCTGCTGAATtgaaacacaatacacaatactaTTATTTCCAATTAGTCAATTTCTATAAAATGGCTTGTAAGTGTGTATTTAGTAATACACACTTACAAGTGTTGTATTTAGTAAGCATACAGTTGCTGAATTGTGACTTAATGTTTACCATACAATTTGTCTGGATGTTGGATTGACGTAGAAATGTTGGATGATTGGAACAATAAAAGCACATTGCAAAGTGGTAGAAAAAAAAAA

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855790 lncRNA upstream 54268 82286579 ~ 82286949 (+) True G753585
TU855789 lncRNA upstream 54675 82286100 ~ 82286542 (+) True G753584
TU855768 lncRNA upstream 103966 82236011 ~ 82237251 (+) True G753563
TU855705 lncRNA upstream 115511 82211501 ~ 82225706 (+) True G753503
TU855704 lncRNA upstream 254930 82082317 ~ 82086287 (+) True G753502
TU855820 lncRNA downstream 7538 82365824 ~ 82366453 (+) True G753592
TU855879 lncRNA downstream 15274 82373560 ~ 82374769 (+) True G753631
TU855906 lncRNA downstream 83189 82441475 ~ 82441819 (+) True G753658
TU855911 lncRNA downstream 109501 82467787 ~ 82468327 (+) True G753662
TU855913 lncRNA downstream 114485 82472771 ~ 82473141 (+) True G753664
XM_021614033.2 mRNA upstream 20451 82313294 ~ 82320766 (+) True LOC110530769
XM_021614022.2 mRNA upstream 88838 82237716 ~ 82252379 (+) True LOC110530764
XR_005052972.1 mRNA upstream 232704 82105100 ~ 82108513 (+) True LOC110530760
XM_036986492.1 mRNA upstream 306697 81946192 ~ 82034520 (+) False kirrel1b
XM_036986493.1 mRNA upstream 306697 81946192 ~ 82034520 (+) False kirrel1b
XM_021614036.2 mRNA downstream 917 82359203 ~ 82361901 (+) True czib
XM_036986513.1 mRNA downstream 3833 82362119 ~ 82384840 (+) False scp2a
XM_036986511.1 mRNA downstream 3834 82362120 ~ 82384858 (+) False scp2a
XM_036986512.1 mRNA downstream 4396 82362682 ~ 82384858 (+) True scp2a
XM_036986516.1 mRNA downstream 167664 82525950 ~ 82535140 (+) True LOC110530773
TU855496 other upstream 415058 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 538932 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 853607 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1599272 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1707165 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 897453 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1271086 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1294759 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 1294759 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 1299811 83658097 ~ 83660046 (+) False G755298

Expression Profile