RNA id: XM_036986539.1


Basic Information

Item Value
RNA id XM_036986539.1
length 5633
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC110530786
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83175734 ~ 83204194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagaggaggaggcagacAAGAAGGTGAAGATAGAGGAGGTGAAGgcagaggaggaggtgaaggcagaggaggaggtggaggaggaggcattGAAGCTGAAGCTGGtcacactcacagggccccaCAGAGGAGGCCAGTGTTCACAGGGCAGGGTCAGAATGCCCAACCTCAGTCAGACCTATTTAGCCCTAGCCAAACCTATGACTACAACCCTGCCCAGTGGAGCTGGCCAATGGAGCCCTCAGGCCCTGGTCTGAGACACTATTCCCCTGTGAGAGAACAATGTGGCTGTGTGGGACAGGGTGGAGGTGACGCTGTTGGGACGGCGACCGGGACACACCCCTTCAACAGCAGCAGACATGCGTCAGCCTTGTCACTCCCGGCGGACCCAGAGCCGGCACACAGACAGACTAGCTACAACTACGATCCAGAGGGGAGCAGGCAGGCTAGTTATGGAGCGGAAGAGCAGATCTGGGGTCAGTCAAAACACAGACAGGCCAGCTGCAGTTACAGTACAGAAGACAAACCGATACGCAGGCAGGCTAGTTATGGAGTGGAAGAACAGATCTGGGGTCAGTCAAAACACAGACAGGCCAGCTGCAGTTACAGTACAGAAGACAAACCGATACGCAGGCAGGCTAGTTATGGAGTGGAAGAACAGATCTGGGGTCAGTCAAAACACAGACAGGCCAGCTGCAGCTACAGTTTGAGGCTAGAAAGACAGACTAGCTACGGTCCACAGgaactacacagacaggctaGCTACAGCTACAGTCCAGAAGACAAGCCAATACACGGACAGACTAGCTACGGTCCAGAAGAACAGATCTGGGATCTGTCGAAACACAGACAGGCTAGTTATAGTCCAGAAGACAAACCGATACACGGACAGACTAGCTACGGTCCAGAAGAACAGATCTGGGATCTGTCGAAACACAGACAGGCTAGTTATAGTCCAGAAGACAAACCGATACACGGACAGACTAGCTATGGTCCAGaagaacagatctgggatcagtcgAAACACAGACAGGCTAGTTATAGTCCAGAAGACAAACCGATACACGGACAGACTAGCTACGGTCCAGAAGACAAGATCTGGGATCAGCCGAAACACAGACAGGCTAGCTACAGTTACAGTACAGAAAGGCAGGACTGGAGATTTACTGCTGGTGGTCAACACGATCATTTGGACAGGTGTGTACCACTGGAACAAGGAAATTTACACTCCCACATGCCAAATGGATGCTGTGGCATTGGTGGTCCAAGTCCCAGGCCTGTGTCCTCTCAGGGCAGGGGAGATAGAGCTAACCCCCAGGAGAGGACTACTAGATTAAAGGCTGGAGGAGTTGGAGGTGGGATAGGAGAAGACGGCTGTAATGGACGACATGTCCCTGCTGGCTCGAGCTCTGAGGGTTTGGTCAGGAAGAAGCAGGGTTCGGTCTGGAAGAACCAGGGTTTGCTCCGGGAGAAGGAGGGTTCAGTCAGGGAGAAGGAGTGTTCGGTCCTGGAGAACCAGAATGCGATCCGGGCGAATGAGTGTGCGGTCCATGAGAACCGCGGTTCAACCCAGGAGAACCAGGGTTCGATCCGGGAAAAGGAGGTTTCAGTCCAGGCGAAGAAGGGTTCAACCCAGGAGAACCAGGGTTCGATCCGGGAGAAGGAGGTTTCAGTCCAGGCGAAGGAGGGTTCAACCCAGGAGAACCAGGGTTCGGTCCGGGAGAAGGAGGTTTCAGTCCAGGCGAAGAAGGGTTCAACCCAGGAGAACCAGGGTTCGATCCGGGAGAAGGAGGATTCAGTCCGGACGAAGGAGGGTTCTGTCTGTGAGCAGATCAGACAGGTGGTGTCAGACCTGGAGGGGGTCCTGGGGGGTCTCAAACAAGTCCACGTGGAGATGAAGGAGGTGGTCCAACAGATAGATCGTCTGACAGCTAACATTGAcctggaagaggaagagggatcaTGTAACAAGTCCCCTAGTCGTGGTGACAGTCACCTCAACCCCAGAGACTGTAAAGGTGGTGACGGTCACCTCAACCCCAGAGACTGTAAAGGTGGTGACGGTCACCCCAACCCCAGAGACTGTAAAGGAGTCCTGATGTTCAACCAGGGAGACCAGAGACCACAGTACAGAGACATGGACCGGATCGTCAACCAGAAGACTACTAGGGTCCAGGTACACACCCACTGGACTGGTACAGGGGACCTGGTCCacaaccataagactcctgggAACCATGGACCACAGTGCAGCGACATGGATCATACTGTCATCATACATGACCCTCCTCCCGACCCCAGAGACATCCCTGGGGTCCTGGTGTACAGACAGAAGACTAATGGAGATCAGGGAGTCTCCCTACTGTACAGACAACCTGACCATACTGTCACCATACGAACTAactccctgtctcctgtcctcaCCGCATCTGTCATCAAGACCAACCGGGTTGGGGTCACAGCCCTGAGCCCCATGGGCTCCCTGAGCACCTCCAAAGACCCCAAACAGGACAGACGGGGGCTCAACGGACACCCTCCTCTACCCGGTCCAGGTAGAGAACTGAACCATGTGGCCCCCCAGACCCCCCCAGAGCTAGAAATGACCCGCTCCCTACCCCTGCCCCTATGGACTCAACTGTCTGACCCCACAGCCATGGTCGGATACAGTGTCCCCACTCTTAGGATCCAGAAATCTCCACTGTACCCCCGCCACAACGGACGGGTGGAGAGGCTCAGTAAGAGTCCGGCTCAACCAACCTACCCTGCCCACCCAGCACTGCCGGTCCTGCCCCACCTGGCCCAGCCACCCTACCCTACCCACCCTAACCACCCAACCCACCCTGCCCTGCCTCCCAGTGACTTGAAGACACCCCCCTGGTGTGGCATGGTATGAGGGGACAGCCTCACTTCCATGGGGGCCTGGAACATATAAtacaaggacagaactacactGATAAGTAGTCTGAGAAGGAAAGCTTgcgGAGCCCTGACATGGTGAAGAGATGTCAGTCAGTGGTGGACACGGTCAGAGGTGGACACGGTCAGAGCCCGCCCTGAAGAGGGGGCTATTTCCAAGGGAAAACgctccagacagacaggaggggaaTTCCACATGAAAGCCTGCGATGCACAGGCCTTGAGACGCACAGTATGAAGCAAGCACTTCGACATACATGAACATGTATGTGTGGTGTCTGGGGGGTTGGCAAAAACTCAAGACAGCAAAAACTGACTGTGTCACATTTCTTACCTTTGTGTATGAAATAAAGATAGCAGTGACCTAATAATTGGTATTAATATTGATTTGAAAtgtgttatgttctgttctggcaCCGATGTGTGTTTCCATTCTCCTTAACCGTCTCTATTCCATGGTATTCCGTGTCTAAACGGCCTTTTCTGCACCTGAAATTACAAgttattccctaaatagtgcactatgttttgatcagagccctatgggtcctgatcaACAGTGGTAGTGGactaaatatggaatagggtgtccTTTGGAACCCTGTCTTTATGATATGGAACAAACTACTGCATGTCGGAATCGTCTGCAGGTAGGCCtgctaccctctctgtctctctgtttattaAAAATGGTGTCTCTTTTCTCCCAGAGCCCCTACAGATAGGATGAGACACCCCTCTgtctatggctgcgtttacacaggcagcacaattctgTTACTTTTTCCACTAATTGTTATTTTTgaacaatcacatcagatcttttaacatcaaatatatttttctgagttgatctgattggtcaaaacaccaatttgtgaagaaaaaaaaaaagatacgaattgggctgcctgtgtaaacgcagccctGTTTCCTCTCTCACCACAGAACagctctgtttctcctcctctctcttctgttgaCGTCAAGCCCAGTTTCCTCCCGTCACTCCCGTCTCCTCCACACTCACTGCAGAACAGCTATGTTCCTCCTCCTCAAGCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACTGCAGAAcagctctctttctcctcctcaagCCCGGTTTCCTCCCGTCTCCTCCACCCTCACTGCAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCAGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACTGCAGAACAgctctgttcctcctcctcaaGCCCAGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACTGCAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCAGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACTGCAGAACagctctgtttctcctcctcaagCCCGGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACCACAGAACAgctctgttcctcctcctcaaGCCCAGTTTCCTCCCATCACTCCCGTCTCCTCCACCCTCACTGCAGAACAgctctgttcctcctcctcaaGCCCAGTTTCCTCCCATCACTCCCGTCTCCTCCAACCTCACTGCAGAACagctctgtttctcctcctcaagCCCAGTTGACTGATAACCAATGTACTGAGTCTCTACCACTACAAACTGTTAGAAAGACTTCATCACGGTGTTACGTAATTCCGGACGGATTCTTGCTTGCTTGAACGCCAATAATTCAGCTACACATGAAATGAGCCAGGGAATCGGtagaacatcactcagagatgcacaacAAACAGTAAaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU856278 lncRNA upstream 107641 83064786 ~ 83068093 (+) True G753958
TU856279 lncRNA upstream 111704 83063182 ~ 83064030 (+) True G753959
TU856301 lncRNA upstream 141160 83034243 ~ 83034574 (+) True G753981
TU856277 lncRNA upstream 152457 83021053 ~ 83023277 (+) True G753957
TU856197 lncRNA upstream 297150 82877922 ~ 82878584 (+) True G753883
TU857361 lncRNA downstream 1550 83205744 ~ 83208931 (+) True G754864
TU857428 lncRNA downstream 19078 83223272 ~ 83224112 (+) True G754916
TU857441 lncRNA downstream 27278 83231472 ~ 83280243 (+) True LOC110530792
TU857453 lncRNA downstream 38134 83242328 ~ 83244775 (+) True G754935
TU857464 lncRNA downstream 55805 83259999 ~ 83266306 (+) True G754946
trnaa-ugc-28 mRNA upstream 313550 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_036986531.1 mRNA upstream 417729 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA upstream 417729 82728482 ~ 82758005 (+) True LOC110530781
XM_021614040.2 mRNA upstream 510713 82664195 ~ 82665021 (+) True LOC110530778
XM_036986516.1 mRNA upstream 640594 82525950 ~ 82535140 (+) True LOC110530773
XR_002474602.2 mRNA downstream 27081 83231275 ~ 83281525 (+) False LOC110530792
XR_005052976.1 mRNA downstream 27081 83231275 ~ 83281525 (+) False LOC110530792
XM_036986862.1 mRNA downstream 112550 83316744 ~ 83328050 (+) True cplx4c
XM_021614061.2 mRNA downstream 157194 83361388 ~ 83378832 (+) False LOC110530794
XM_021614062.2 mRNA downstream 186500 83390694 ~ 83399592 (+) True calr3b
TU855496 other upstream 1249575 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1373449 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1688124 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2433789 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2541682 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 51545 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 425178 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 448851 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 448851 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 453903 83658097 ~ 83660046 (+) False G755298

Expression Profile