RNA id: TCONS_00035362


Basic Information

Item Value
RNA id TCONS_00035362
length 2570
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_017922
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9643499 ~ 9674877 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGACATCATCTTCACTGCGGGAGTACATGGTGGTGTCAGAAAATGGTGGATCTGAGACGTTGTCCTACCTACTACAGCAGAACATGAGTTTCAGTGGATGTGCACATGATCCCAGGACCACACCAGACTTTCAGCAGGTGAACGTGGAGCATCTGATGGTCATGTTCACAGAGGGAAACACACTCAGATATGCCATCAGCAACAGAGTGGGACCTGTAGGAGGTGAGCTACCTGGACTTGTAGAGTTGAATCCATGTTTAACTGGGAAGCACCATTGTGACCCGATGGCCCTCTGTCTGCCAGGGGACGGCACTCAGTATCTCTGTCAGTGTGCTATGGGCTACCAGGGCGATGGACAAAACTGCTACGGTAGGAATCTTTCAGTGTTTCAGTGTCACTTGATTTTGACATCAAGCCAAGCATGCTCCACCGAGAGCTCGGTTCTCTCTTCTGAGGCCTTTAATGAATTACTGCCAGAGTTAAAGTGGTGAACGACTCTCATGGGTTTTCAATCTGTAATCCAGATGTGGATGAGTGCGCGGAGGGGCTCAGTTCCTGTGGTCCTCATTCTGACTGTGTGAACATGCCGGGTGGCCATCACTGCCACTGTCAGTCTGGCTACGAGTTTGACCTCGATTTGCATGAGTGTGTGGataTCGATGAGTGTTTCGAGGAGCTCTGTCATCCGTTTGCTTCCTGCTCAAACACCCAGGGCTCGTTCCGCTGTCAATGCTGGCCTGAATACAAGGGCGATGGCTTCCTCTGCCAACCACCACcAAAAAGGCCCAAGCCTTCATTAACTGCATGccagcagcacagaaacagccTGCAGGAGAGTATGAGCATGTATCCAGCTCTGGAGGCTTTTGTTCCAAAGTGTGATGATAAAGGCCAGTACAAACCCCTGCAGTGTTTGGGCTCCACTGGACACTGCTGGTGTGTGGACAGCAGGGGGCAGGAGAGAGTGGGCACCAGGACAATGCCTGGCACAGCTCATGCCAACTGTGATCAACCAGCTGCTCTGGTTCCCCGTGTGGAGACTGTGTGTGAGCGTTGGAGGCTTGCACTCATGAGTCACTATAATGGTCAGCCGTCCTCTCAGGACTACATGCCCCTCTGTGACGCTCACGGAAATTTCCAGCCTGTGCAATGTTATGGCAACAGCGCTTTCTGCTGGTGTGTGGACCGACATGGTGTTGAAATTATTGGAACCCGGTCCAACGAGGATGTAAAGCCCCCCTGTATATCTGGTGATGCCGCCCCACTCAACAATGCACTGATGTATCCGGTTATAAGCTCCTCCCCTTCAGGCCCTGCTATACTTTACACACAAGCCTCACAGATTGGAGTCATTCCACTTGAAGAAACAGACCCAGTTCAGGAAAAGTCCACTGTGTTATTAGCCTTACAGGACTCGGTTGTGATTGGAATTGACTATGACTGTCAGGAGAACATCTTGTATTGGACAGATTTTGGACGACATACAATTTACAGAGCAGTTCTAATATCTGGGTCTGAACCAGAGGCTGTTATCAGCAaagACTTGATTCAGCCGGAGGGAATTGCAGTGGACTCTGTGCACAGGATGCTGTTCTGGGCAGACAGTGGGAAAGACAAGATTGAGACATCTGGCCTGGATGGCAGTAAAAGAAGAGTACTGATTGACTCAGGTTTGGTCAATCCCAGAGCCATCATAGTAGACGCTAAGAGTGGAACTGTATTCTGGACAGACTGGAACCGTGATGCTCCCAAAATAGAAAGCTCATCACTGGAGGGACGTAACAGAAAAGTACTGGTGCAAGTGGGTCTCATGTTGCCCAATGCCTTGACATGGGACAATGCCACAAATCAACTGTGCTGGGCTGATGCAGGCACAAAGAAACTGGAGTGCATATCTCCGGATGGGACTCAGAGACGTGTGTTCCAGGATACTTTGAACTATCCGTTCAGTCTAGCCATCCATAACAAACACTTCTATTACACCGACTGGGAGAGAGATGGGATACTGGTGATTGACCAAAGCACAGGGAAAAACACAGATTATCTGCCCATTCAGCAGTCACACTTATATGGGATCACATTTATCCCATCACAATGTCTATAGAGACCCTGTGGATCTCTGCAGTTACAGAGACTGTAAGGATTTTtggaatataaataaatgacaacaaaacagaaacattgGTTTTGTATTattagttttgattttattttcggttcatttctatatttttaatGTGCTCTTGTCCACTAAGTTAGTCTCAAGTAACTTCTgcagttgtttttttgtgttataGTCTGAAGCAGATTTTTAGAaaaattttatcttttaattttaggtgttaaagttttattaatcttttgtgttttgttgtatTGCTTATAtctaaatacttaataattttcattcattcattttcttttcggcttagtccttttattaatctggggtcaccacaacagaatgaaccactaacttatccagcacgttttacgcagcggatgccctttcagccgcaacccatctctgggaaacatccacacacactaattcacacacatacact

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-143 Predicted to enable calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane and extracellular space. Is expressed in head. Orthologous to human NID2 (nidogen 2).

Ensembl:

ensembl_id ENSDART00000023809

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035348 lncRNA downstream 808405 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 1322185 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 1690317 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 2004847 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 2432303 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00036798 lncRNA upstream 418752 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035378 lncRNA upstream 455623 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 689378 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 689378 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00036799 lncRNA upstream 1321053 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00035361 mRNA downstream 63053 9575374 ~ 9580446 (-) True XLOC_017921
TCONS_00035360 mRNA downstream 181050 9428966 ~ 9462449 (-) True XLOC_017920
TCONS_00035358 mRNA downstream 181066 9428965 ~ 9462433 (-) False XLOC_017920
TCONS_00035359 mRNA downstream 206978 9428966 ~ 9436521 (-) False XLOC_017920
TCONS_00035357 mRNA downstream 215478 9421448 ~ 9428021 (-) True XLOC_017919
TCONS_00035365 mRNA upstream 93338 9751743 ~ 9755550 (-) False XLOC_017923
TCONS_00035366 mRNA upstream 93977 9752382 ~ 9760424 (-) False XLOC_017923
TCONS_00035368 mRNA upstream 95667 9754072 ~ 9755546 (-) True XLOC_017923
TCONS_00035369 mRNA upstream 117985 9776390 ~ 9780917 (-) False XLOC_017924
TCONS_00035372 mRNA upstream 300101 9958506 ~ 9963713 (-) True XLOC_017926
TCONS_00035349 other downstream 706495 8936903 ~ 8937004 (-) True XLOC_017915
TCONS_00035340 other downstream 1224442 8122693 ~ 8419057 (-) False XLOC_017913
TCONS_00035337 other downstream 1649415 7986950 ~ 7994084 (-) True XLOC_017910
TCONS_00035333 other downstream 2014228 7612282 ~ 7629271 (-) True XLOC_017907
TCONS_00035322 other downstream 2571888 7070640 ~ 7071611 (-) False XLOC_017900
TCONS_00035367 other upstream 94126 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035370 other upstream 118774 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035371 other upstream 247863 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035374 other upstream 395000 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035387 other upstream 2947313 12605718 ~ 12607421 (-) True XLOC_017943

Expression Profile

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