RNA id: TU857557


Basic Information

Item Value
RNA id TU857557
length 2258
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110530794
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83361388 ~ 83380929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATTTGTAAAACATTGTCTAATATACACTGCGTGTacaaatcattaagaacaccttcataatattgagatgcacccccacctacaaggtgttgaaagcgttccacagggattctggcccatgttgactccaatgctttccacagttgtctcaagttggctggatgtcctttgggtggtggactattcttgatacagacggtaaactgttgagcgtgaaaaacccaacagcattgcagttcttgacacaaaccggtgcgcttggcacctactaccataccccgttcataggcacttacagttgaagtcggaaatttaaatacaccttagccaaatacatttaaagtcagtttttcacaattcctgacatttaatccgagtaaaaatgccctgtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagcataataatagagagaatgatttatttcagcttttaattctttcatcacattcccagtgggtcagaagttaacatacactcaattaatatttggtagcattgcctttaaattgtttaacttcggtcaaacatttcgggtagtcttccacaagcttcccacaataaattgagtGAATTATGGCCcatccctcctgacagagctggtgtaactgagtaaggtttgtaggcctccttgctcgcacacgctttttcagttctgcccacaaatgttctatgggattgaggtcagggctttgtgatgatcACTCCAATACAacttggttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacatcctccaccttcctcatgatgccatctaatgtgtgaagtgcaccaatccctcctgcagcaaagcacccccacaacatgatgctgccacccccatgcttcacggttgggatggtgttcttcggcttgcaaacctccccctttttcctccaaacataacgatggtcattacggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtatgatctttgcccccatgtgcagttgccaaccgtagtctggctttttatggcggttttggagcagtggcttcttccttgctgaggatgcctttcaggttatgtcaatataggattagtttttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgccgttgttctaggattgatttgcacttttcgctccaaagtacgtttatttctaggagacagaacgcatctccttcttgAGCtgtatgtggtcccatggtgtttatagatgcgtactattgtttgtacagatgaatgtggtaccttcaggcatttggaaattgctcctaaggatgagccagacttgtggaggtctacattttttttgaggtcttggctgatttcttttgattttcccatgatgtgaagcaaagaggcactgagtttgaaggtaggcctggaaatagatccacaggtacacatccaattgactcaaatgatgtcaattcacAAAtcagacttctgacccactggaattgtgattaagtgaaatcatttgtctgtaaacaattgttggaaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaagactatagtttgtaaacaagaaatttgtggagtggttgaaaaacgagttttaatgacaccaacctaagtgtatgtgaacttctgacttgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgaacttctgacttcaactgtaaatgtgttgtcttgcccattcaccctttgaatggcacacatacacaatccatctctcaaggcttaaaaatctttaacccgtctcctccccttcatctacactgattaaagtggttTAAAAAGGTGATAAGGgagcatagctttcacctgggttcacctggtcagtctatgtcatggaaagagcaggtgttcttaatgttttgtaaactcggTGTACTGTTCAACTTGATTCTCTGTTCAGTCATTTGTAATGCATTTTCTGTGCTGTACCTTGAattcatttatttacattttgaCATTATTTGTGTTGTATTTAGATTCAATGTTCTTTGATTGTAATAAAAACACACTAGAAACAGTGTGACAGAAGTTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU857552 lncRNA upstream 25186 83353210 ~ 83353486 (+) True G755014
TU857538 lncRNA upstream 48412 83330023 ~ 83330260 (+) True G755002
TU857532 lncRNA upstream 59496 83311759 ~ 83319176 (+) True G754996
TU857517 lncRNA upstream 77694 83300758 ~ 83300978 (+) True G754989
TU857464 lncRNA upstream 112366 83259999 ~ 83266306 (+) True G754946
TU857566 lncRNA downstream 387 83381316 ~ 83382316 (+) False G755027
TU857567 lncRNA downstream 387 83381316 ~ 83382316 (+) True G755027
TU857568 lncRNA downstream 1888 83382817 ~ 83383032 (+) True G755028
TU857569 lncRNA downstream 3350 83384279 ~ 83384554 (+) False G755029
TU857570 lncRNA downstream 3394 83384323 ~ 83384648 (+) False G755029
XM_036986862.1 mRNA upstream 50622 83316744 ~ 83328050 (+) True cplx4c
XR_002474602.2 mRNA upstream 97147 83231275 ~ 83281525 (+) False LOC110530792
XR_005052976.1 mRNA upstream 97147 83231275 ~ 83281525 (+) False LOC110530792
XM_036986541.1 mRNA upstream 174478 83175734 ~ 83204194 (+) True LOC110530786
XM_021614062.2 mRNA downstream 9765 83390694 ~ 83399592 (+) True calr3b
XM_036986549.1 mRNA downstream 24430 83405359 ~ 83471799 (+) False LOC110530798
XM_036986548.1 mRNA downstream 24432 83405361 ~ 83472252 (+) False LOC110530798
XM_021614078.2 mRNA downstream 331385 83712314 ~ 83726845 (+) False LOC110530806
XM_021614079.2 mRNA downstream 331385 83712314 ~ 83727620 (+) False LOC110530806
TU857445 other upstream 120806 83255739 ~ 83257866 (+) True G754927
TU855496 other upstream 1452513 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1576387 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1891062 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2636727 80741604 ~ 80741945 (+) True G752398
TU857895 other downstream 248443 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 272116 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 272116 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 277168 83658097 ~ 83660046 (+) False G755298
TU857995 other downstream 405031 83785960 ~ 83786941 (+) True LOC110529145

Expression Profile