RNA id: XM_021614062.2


Basic Information

Item Value
RNA id XM_021614062.2
length 2439
RNA type mRNA
GC content 0.46
exon number 9
gene id calr3b
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83390694 ~ 83399592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAACCAATGAGAGGCAGACATCTGTTCACTCGAGCAACTCCGAAATTGCTTTCCCTTCCTTGTCATTCAATGAAATCACAAGACATTACCTGGAAGAGTCTCTTTTGAGGACAACGTTTAAGCTTTAGGCGGTCAAAATGCAGGTCTTGGGATCATTCGCGATAATTCTGTCCATATTTTCTGTTCATTCTACCGTTTATTTCCAAGAACAATTCCTTGATGGAGATGCCTGGAAGACTCGCTGGCTGGACTCTAAGCACAAGGCAGACTACGGAGAGTGGAAACTGACAGCTGGTAACTTCTATGGAGATGCTGAGAAGGACAAAGGTCTACAGACGAGCCAGGACGCCCGTTTCTATGCCGCATCGGCCCGCTTCGAACCCTTCAGCAACGAGGGGAAGACTCTGGTGATTCAGTTCACTGTGAAACACGAGCAGAAAATTGACTGTGGTGGCGGTTATGTCAAGGTGTTCCCCTCCACCCTTGACCAGGCTGAGATGCACGGAGACTCCCAGTACTACATCATGTTCGGCCCTGACATCTGTGGCTACAGCACCAAGAAGGTCCACGTTATCTTCAACTACAAGGGCAAGAATCACCTCATCAAGAAGGAAGTCAAGTGCAAGgATGATGAGCTGACCCACCTGTACACGCTGATCCTGAACCCAAACCAGACCTACGAGGTGAAGATCGATAATGAGAAGGTTGAGTCAGGCACTCTGGAGGAGGACTGGGACTTCCTGCCGGCTAAGACCATCAAGGACCCCGAGGCCAAGAAGCCCGAGGACTGGGACGACCGCCCCAAGATGGACGATGCTGAAGACACCAAGCCAGAGGACTGGGATGTGGCTGAGAACATCCCTGACCCTGATGCCAAGAAGCCTGACGACTGGGACGTGGACATGGATGGAGAGTGGGAGCCGCCTGTGATCACCAACCCAGAGTACAAGGGAGAGTGGAAGCCCAAGCAGATTGACAACCCTAACTACAAAGGAGCCTGGGTCCATCCTGAGATCGATAACCCAGAGTACGCCGCTGACTCTAACATCTACAAGTTTGATGACATCAGTGTCCTGGGCCTGGATCTGTGGCAGGTGAAATCTGGCACAATCTTTGACAACTTCCTGGTCTCAGATGATGTGAAGGAAGCAGAGGAGTTTGGAGCTGAGACATGGGGTGTTACTAAGGAGCCAGAGAAGAAAATGAAACAGGAGGAAGATGACAAGAAACGTAAAGAGGAAGATGAGAAAAACAAAGAACAAGCCACTGAGGCAGAAGAGGAAGGTGAGGACGAGGAAGGTGaggacgaagaggaggaggaggaggaggagactccaGAGGAAGGAACTGAGGAAGAAGAGGTTCCAGAGAAAGATGAGCTATAGGCTGGCTTGGACACGAGTGTCTGTGAATCCCAATTCAACCCCTAGCCACTACATCCTAGTCTCTGGTGTAGATCTGAGAGATTCAAGAAGGATGTCCACAATTTGACTACAATTCCAACAGAGGGCAAGATTGATCTGCCAATTATGCAATCCTCTGAGATCTACACAAGTACCTATGAGCTAGGGGTTGATTTGTGATTTAGGGTGTGTGTCCCGCTCTGGCTCTACTAACCAGGGAGTTAACATGGCTGCTATGCATCCATCCCCTGAGAAGCCAATGGGTCCATTGAGAGTTAAAAGCTTTACTGAAGtgtatcccaaatgacaccctacctCTGATATAGTGCAGTTTTGACCAGGACCCCTGGGTAAAAGTATtgctatatataatatattataggtgatcgggtgccatttgggatacagattGGGTGGTATTGGACTTAGTGATTCACACGTCAGCTTGTATGTTTTATAGTTGATTTTTGTTTCCCTTATCCAGATATGACATTCATAGGTCCTCCCAATCCAGTACGTCATGCTTAATTGTGTAGTGTGTTCAGTGTCTTTATATCCAACAGCAGTTAATTTACTTTTGTACCATGTAACATATTTCCATTGGCTCTGCCATTTTCTTTTCCGACTCAACTTAACACACCAAGATGTTCTCTGCTCTGACGTGATTCACAAAGTCACTGGTTGTCATCGTTTGGAAATAAATTGGTTCTTGTACCACTGAATGTTTTGTAAAGTGCAACATGTTTCTCAACGTGCCTTCTCATCCGACCTGGCACTTTGTCATTCACATCAGCTCATTGTTATTCTACTGTGTTCTCATTACATCAATTTGTTTCGCGCTGAATTTTCCTCACTTGTTTGTTTGTCTTTACTGTTTGTTTCCATACGTGTTCAATGAGATTACATGCTTGGCCAATTAAAACAGTTGTTGGGTTCTCTGCGTTTTGATGAATATTGTGACAGATTAGTCATTTATAAATTGTCCCTCCTGTTCAATGCTGTGACTGTCAAATACAGTTGGTTTCTGCTTTGAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU857575 lncRNA upstream 5581 83384913 ~ 83385113 (+) True G755030
TU857570 lncRNA upstream 6046 83384323 ~ 83384648 (+) False G755029
TU857569 lncRNA upstream 6140 83384279 ~ 83384554 (+) False G755029
TU857574 lncRNA upstream 6140 83384323 ~ 83384554 (+) True G755029
TU857568 lncRNA upstream 7662 83382817 ~ 83383032 (+) True G755028
TU857601 lncRNA downstream 22033 83421625 ~ 83422251 (+) True G755045
TU857619 lncRNA downstream 49719 83449311 ~ 83451776 (+) True G755062
TU857596 lncRNA downstream 53452 83453044 ~ 83473827 (+) True LOC110530798
TU857623 lncRNA downstream 66375 83465967 ~ 83504551 (+) True G755065
TU857599 lncRNA downstream 68957 83468549 ~ 83470316 (+) True G755043
XM_021614061.2 mRNA upstream 11862 83361388 ~ 83378832 (+) False LOC110530794
XM_036986862.1 mRNA upstream 62644 83316744 ~ 83328050 (+) True cplx4c
XR_002474602.2 mRNA upstream 109169 83231275 ~ 83281525 (+) False LOC110530792
XR_005052976.1 mRNA upstream 109169 83231275 ~ 83281525 (+) False LOC110530792
XM_036986541.1 mRNA upstream 186500 83175734 ~ 83204194 (+) True LOC110530786
XM_036986549.1 mRNA downstream 5767 83405359 ~ 83471799 (+) False LOC110530798
XM_036986548.1 mRNA downstream 5769 83405361 ~ 83472252 (+) False LOC110530798
XM_021614078.2 mRNA downstream 312722 83712314 ~ 83726845 (+) False LOC110530806
XM_021614079.2 mRNA downstream 312722 83712314 ~ 83727620 (+) False LOC110530806
XM_036986552.1 mRNA downstream 322004 83721596 ~ 83726845 (+) False LOC110530806
TU857445 other upstream 132828 83255739 ~ 83257866 (+) True G754927
TU855496 other upstream 1464535 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1588409 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1903084 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2648749 80741604 ~ 80741945 (+) True G752398
TU857895 other downstream 229780 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 253453 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 253453 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 258505 83658097 ~ 83660046 (+) False G755298
TU857995 other downstream 386368 83785960 ~ 83786941 (+) True LOC110529145

Expression Profile