RNA id: TU857995


Basic Information

Item Value
RNA id TU857995
length 626
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC110529145
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83785960 ~ 83788580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAGACATAGATGCTCCAAGGACCCACAACAAGAAGCATGTACCATTACCTTATCTCTGAGATGTTACCTGTTGCTATGATCACTGCCATTGCCACGTTAGTGAGCATGGCTACTGCAAGATCATCACTAAATTATTTGGAAAGCCACTTTTCCATGGAGAACGAGTCTGAAGAAGTGCGTTCTGCAGCTATCAAGAGGCTGCTGGAGGTGTTTGGGATGGAGGATGCTCCTCTCCTCCGGGGCGACAAGCAGCCGCCTCAGTACATGGTCGACCTGTACAACACTGTCGCAGATGTGGACGGAGTTACCAAGGACCCCTACATTCTGGAGGGGAATACAGTACGCAGCTTCTTCGACAAACTGCACAGTGAACAAATCGAGTTCCTGTTCAACTTGTCCATGGTGGCCAGTAGTGAGAAGGTTCTAACCGCGGAACTCCATCTCTTCAAGCTGCGGCCTCAGGTTTCTGCAACATTCAATAGATATCACTTCTGTCAGGTCAGTGTCTACCAGCTTCTGGATAGCAGCAAAATGAACATTACTCAGGGGAAGAAGCTGCTGTCTTCCAGACTGATCCCTGTCCCCTCCACTGGCTGGGAAGTGTTCACCATTACACAAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU857934 lncRNA upstream 73966 83711593 ~ 83711994 (+) True G755322
TU857930 lncRNA upstream 80597 83705143 ~ 83705363 (+) True G755318
TU857926 lncRNA upstream 87440 83698262 ~ 83698520 (+) True G755314
TU857921 lncRNA upstream 109929 83675409 ~ 83676031 (+) True G755310
TU857908 lncRNA upstream 125914 83659152 ~ 83660046 (+) True G755298
TU857999 lncRNA downstream 8053 83794994 ~ 83797174 (+) False G755372
TU858000 lncRNA downstream 8053 83794994 ~ 83797174 (+) False G755372
TU857998 lncRNA downstream 8789 83795730 ~ 83797174 (+) True G755372
TU857989 lncRNA downstream 56116 83843057 ~ 83843553 (+) True G755368
TU858026 lncRNA downstream 69355 83856296 ~ 83856644 (+) True G755398
LOC110531027 mRNA upstream 4556 83777694 ~ 83781404 (+) True LOC110531027
XM_021614080.2 mRNA upstream 51721 83728069 ~ 83734239 (+) True LOC110530807
XM_021614079.2 mRNA upstream 58340 83712314 ~ 83727620 (+) False LOC110530806
XM_036986551.1 mRNA upstream 58340 83721596 ~ 83727620 (+) True LOC110530806
XM_021614078.2 mRNA upstream 59115 83712314 ~ 83726845 (+) False LOC110530806
XM_036986555.1 mRNA downstream 27726 83814667 ~ 83842323 (+) False LOC110530810
XM_036986558.1 mRNA downstream 27726 83814667 ~ 83842323 (+) False LOC110530810
XM_036986561.1 mRNA downstream 27726 83814667 ~ 83842323 (+) False LOC110530810
XM_036986563.1 mRNA downstream 27726 83814667 ~ 83842323 (+) False LOC110530810
XM_036986565.1 mRNA downstream 27726 83814667 ~ 83842323 (+) False LOC110530810
TU857907 other upstream 125914 83658097 ~ 83660046 (+) False G755298
TU857884 other upstream 131522 83653045 ~ 83654438 (+) False G755277
TU857885 other upstream 131522 83653045 ~ 83654438 (+) True G755277
TU857895 other upstream 156222 83629372 ~ 83629738 (+) True G755286
TU857445 other upstream 528094 83255739 ~ 83257866 (+) True G754927
TU857984 other downstream 99873 83886814 ~ 83889637 (+) True G755363
TU857978 other downstream 116694 83903635 ~ 83905612 (+) True LOC110530814
TU858056 other downstream 182437 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 475046 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 516529 84303470 ~ 84308274 (+) True G755602

Expression Profile