RNA id: XM_036986567.1


Basic Information

Item Value
RNA id XM_036986567.1
length 2784
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110530812
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83875531 ~ 83882723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGAAATGGCGTTTACTTGGGCTAGTCCAAAAACTCGCTCGCCAAGCAGTTACGAACAACGCGTTGAGAAGTCAAACCTGTAATCTCATACTTTCTCTAGACTATATTGTTGTTGTCATCATGCCCGTGTGGTGTTCTGTACCACACTGTGCTAATTACAAACAAGCGCAAAAAGAAGGAGTAATCTTTCACAGTTTGCCTACCGGAGATATACCCCGATGCCGTAAATGGCTCGCGGCTATCAAGAATAATATTTACAATGTCAACACACCAGTGGCCAAGTATCAAAACATCCGCGTCTGTAGTCAACATTTTCGTCCCGAAGATTATTTGAGGGATTATCAATCTGAATTGATGGGGAAGCCAAATCGACGGCAGCTAAAAAGGGACGCGATACCATCGGTGTTTTCCTTCACAACAAAACGGAAGACATCCGATCAACCAACACCAGCACAGAAGAAAAGATCTCGATTAGAGTATCTGAAGAGTATTGAAGCTCTCATCACACCAGAGGTGGCTCCAATATTGCCTGGAAGGAAGAACAAAGGTGTTCTGACTCGACCCCGTGTCCAGGATTCTGGAACCAGCATTGACATTACACCTGAGAgtgcagatgtgtgtgtgaacagagACTGTCTGCTGCAGCTCTTCCTGCTCTGCGAGAGGTGTGGCTGCGACTGTGATGCCAGGATCCAGGATGAACTGGGTTGCTTCTCTGTCGTTCAGAAGTGCCCGTTCTGCAGTCACCACAGGAAATGGATGAGCCAGCCCTCTTTTGCCCAGGAAACCTGTGGATTGAAGGAAGAGGCGATTGGAGGGACATGGTCCCAGCCATGTGAAGACAGAGACCCAGACCTAGAGAACATTTGCTTGACTATGGAAATCACTGAGGAGTTGTGTGAACATGATGCTCGGTCCTCGGACGAGGAGAGTGAGGAGGACGAAAAGCCCAAGAAGCGGAATAAGCAGGAGAGATCAGATGAGACCGAGTGGGAGCCGTCTGACGAGGAAGACATTGTAGTGGACTCTGATTCTTCTGAGGATTTGGAAACGGCAGGTTCCTCTGGTCTAACAGAAAAGGCCAACGTTGATAATTGTCAGAGCGGaatagagaaagaagagagactTGTGGAGTGGTGCACTGACTGCGGAGCCGAGCCTGTACTCGCCTGCACCACACAGCGCCATAAGAAGCTGTacgcctgtggtgtgtgtgtgagtgaggtccAACAAGCTGTTGGATTTGACCGATTCTACATGCAGTTCGAGGACCCGGCCAGCTTCAAGGAACATGTACGACGtgaacacaacacacaacctCATAGGTTTCTCTGTACAGACTGCGGCATCTTTCCTCACAAGAAGGACCATTGGTGTGAGCACAAGATCAAGAAATTCCACTGTGTAGACTGTGGTAAGCGCTGTAGGACTGAAAACGGTTTCAAGATTCACAGGCACCTCCACCACCCTGACCATGTTTTCCCCTGTAAGTTCTGCCTGCAGCCATTCAAAACCAGGTCAGACAAACTGACACACGATGAAAGCCATCAGGGTGAGATCTCTCCCTACCAGTGCTCAGAATGTTCCGAAAAATTTGATGACCTAATGGCAAGGAACAGCCACCTACGAACCCACAGCAACCTGAATAGAAACATCTGCCACACTTGTTACAAAGAATTTTCTAACAAAAATCATCTGGAGAGGCACATGATTATTCACACAAGGCAGAAGCCCCACATGTGCCAGGTCTGCCAACAGTCCTTCAACCAAGCGAGCCACCTTAAGTCCCACATGCGCCTCCACACAGGGGAGAGGCCCTTCAAGTGCCAGCAGTGTGAGAAGTGCTTCAATCACAATGTCAGTCTGAAGAACCACATCCAACGCTATCATGGCCCTGAGAAGAGTATCACAagctgaggaagaggagagttacacaggctgagggagaggagactacCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCCCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCCCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCTCAGCCTGCGGTAGTGGAGACTACCGcaggctgagggagaggagactaccgcaggctgagggagaggagactaccgcaggctgagggagaggagactaccgcaggctgagggagaggagactacCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGCTGAGGGAGGGGAGACTACCGCAGGctgagggaggggaagggagagagagaaggtgaggccCAGAGGGACATCTAGAACCGCTGGGGAAAGAAATGTAGCTGTAGAAAACTTAGATTGATCacaccagggttgtgttcatagggcacaccgtagcaaaacgtttttcaacaggaaattAAAATGAGCTATTTACTACTACTTTAACTTTTAACTTAGTTTGTGTTGATGTTATATATCATGTATTGATTACTTTCTACATATTTTAAACATTTGGAATTCCAGTTGTTTTAATAGTTGTTGAAATATCATATTAGAAaatagttatatttatatagaggATTTTTGTATTTGCTGTCATGAGGATGATTTAAAGTTCCATTTTGAAATACTGC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU858027 lncRNA upstream 18836 83857008 ~ 83857580 (+) True G755399
TU858026 lncRNA upstream 19772 83856296 ~ 83856644 (+) True G755398
TU857989 lncRNA upstream 32863 83843057 ~ 83843553 (+) True G755368
TU858000 lncRNA upstream 79242 83794994 ~ 83797174 (+) False G755372
TU857987 lncRNA downstream 3316 83886039 ~ 83886665 (+) True G755366
TU857991 lncRNA downstream 8321 83891044 ~ 83891688 (+) True G755370
TU857977 lncRNA downstream 19257 83901980 ~ 83904394 (+) False LOC110530814
TU857976 lncRNA downstream 23502 83906225 ~ 83908702 (+) True G755357
TU858033 lncRNA downstream 28725 83911448 ~ 83911724 (+) True G755405
XM_036986566.1 mRNA upstream 4855 83846346 ~ 83871561 (+) True LOC110530811
XM_036986557.1 mRNA upstream 34093 83814670 ~ 83842323 (+) False LOC110530810
XM_021614093.2 mRNA downstream 12963 83895686 ~ 83903281 (+) False LOC110530814
XM_021614094.2 mRNA downstream 12963 83895686 ~ 83903281 (+) False LOC110530814
XM_021614096.2 mRNA downstream 31260 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA downstream 31273 83913996 ~ 83918907 (+) True lrrc42
XM_021614101.2 mRNA downstream 68147 83950870 ~ 83952733 (+) True tceanc2
TU857995 other upstream 89475 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 216370 83658097 ~ 83660046 (+) False G755298
TU857884 other upstream 221978 83653045 ~ 83654438 (+) False G755277
TU857885 other upstream 221978 83653045 ~ 83654438 (+) True G755277
TU857895 other upstream 246678 83629372 ~ 83629738 (+) True G755286
TU857984 other downstream 4091 83886814 ~ 83889637 (+) True G755363
TU857978 other downstream 20912 83903635 ~ 83905612 (+) True LOC110530814
TU858056 other downstream 86655 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 379264 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 420747 84303470 ~ 84308274 (+) True G755602

Expression Profile