RNA id: XM_021614095.2


Basic Information

Item Value
RNA id XM_021614095.2
length 1873
RNA type mRNA
GC content 0.46
exon number 7
gene id lrrc42
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83913983 ~ 83918907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAGTAACTTATCTATTGTCTTTTGTGAGTTTTGTTGTATGTTGAAATATTGTTGTACTAAATTGACGgagcaaaatatatatttttttcttcatggATTGTAGGTTATCAACGTGAGGGACCTTTATTGTGAAGGACGAATGAATACCCAAGACGTCGTTTTAGACAGGCCCAGTTCAGCCAGAATTATTAACGGAAGCTGGCGGCAGAATCGAACATCTCCTTAGTTAACACGACTTGAtggttagctactgtagctagatgaATGGTGTGGAAAGACGTTAATTCGTAGTAAAGTCTTATAAAATGGGCGACCTTGACTCTGGCATAGTATATGTGCGCGAGAGAGGACAGCTTCGTCGCGTCAATAACATTGTGCTCGCGGAGACGAAGCCGCCTTCATCATCACACAGAACAACAAACCCTCTGGCGTTGAAAAAGGAGCATTTCGTCTTCACCTATAACAAAGAAGGCAGTTTGAAgtacactgccaaatccctctaCGACATATCTCTGCTGTTTGTGGCGTACAACATCAACCATGTCGATTCTCTCGAAGGATTTCCTGAACAAGTAGGGGACAGACTCTTCGCCGCCGCGGAGGAAAAACAGATATTTTCAGATCCTGATGCAGCCCCCAAGGCTCTGCAGTTGTTCAGTGATGCATACGGGGACATAGTGCTCGGGTCACTTTGTTTACGGCATAGGTTTCCTTTGCTGTCTGAAAAGCTGGAAGAGATAAAAACGTTTCATAGTCTGAAGTGCCTGGATCTCTTTGGCTGCAGACTGGGAGACAGCCACGACATCTTCCAACATCTCACATCAGATGCATTGTCCAGTAGCTTGGTCCAGCTGTCCCTGGGTGGTAACAGCCTGTCAGACCAGGGTCTCCAGAGACTGACAGCCCCTGTCAGGATGATGAGGAGGGGGCTGAGACACCTACATATACTGGACCTGTCCTACAACCCGATCACTGAGAAGGCAGTTGGATATCTCACATGCCTCCCAAAGTTACAAGGTCTTGATGTATCAGGAACTAACATAAAGGTTGGCCCGTCATTCAAGCAGACCGTGAGGAACACCATGGGGTTGGTCCTGTCTGAGAAACTACTGGAGGCCTTCGACCACTCCTGTTGTAAAACACAAGGCTGGGCAGAACAGGTAGTAAACCAGTGGGAgttgagtgcaacagaactgccCAAACTAAAGAAGATCCAAGAGTCAAGAACATCAGCTATTCGCTTTTTTGGCAGAGAGAAGTTTGTCAGAGGAATCCTGAGCGCATCACCTCTGGTCCAGGATAAAGAACAAGACAAAACCAGGGAGAGGATACATTTGTATAAACCAgcagcaagcacacacacacatcagacccAATGCACAGGGACTAAAAGTGGACAAATTAAGACCTCGTCACTCGACAGCGTTGAAATCGCAGGGTCCACCAACGGACATGTAAAACCCTGTTCACAGAACAAGAAGAGGCCTCGTAAACACCAGGTCGGGGACAGTGGTCATCACAGCCCTCCTGTTAAACGCGCTTCTTCATCACCAGCTCTCACAGCAGGCGATTTGGATCTACTCAACAGTTACTGATGCTTCGTCTCCTCCGTAGCCGAGGTCCACAGTctccaaatgtgtgtgtgtgtgtgtgtgggggtgtgttttCGTGTTTTTCGACAATGCACTGCTCAATTTGAACTCTTCCTGATGTCATGCATCCAGTAGAGTTCAGCTTCCACCTCTAGGTTAGCTTTGGTTTTTAGTTTTTGTTTTAGCTGGAGGAACATTTAGTGTTTTCTTCGTCAATCTGCTGCTTATTTACGTTTTAAACTTTTTACAAATAAAAgtatattgttttattattgtAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU858033 lncRNA upstream 2272 83911448 ~ 83911724 (+) True G755405
TU857976 lncRNA upstream 5294 83906225 ~ 83908702 (+) True G755357
TU857977 lncRNA upstream 9602 83901980 ~ 83904394 (+) False LOC110530814
TU857991 lncRNA upstream 22308 83891044 ~ 83891688 (+) True G755370
TU857987 lncRNA upstream 27331 83886039 ~ 83886665 (+) True G755366
TU858037 lncRNA downstream 4441 83923348 ~ 83923964 (+) True G755409
TU857969 lncRNA downstream 15674 83934581 ~ 83950747 (+) True G755353
TU858052 lncRNA downstream 44399 83963306 ~ 83963521 (+) True G755424
TU858055 lncRNA downstream 47153 83966060 ~ 83966344 (+) True G755427
TU858062 lncRNA downstream 55878 83974785 ~ 83975013 (+) True G755431
XM_021614093.2 mRNA upstream 10715 83895686 ~ 83903281 (+) False LOC110530814
XM_021614094.2 mRNA upstream 10715 83895686 ~ 83903281 (+) False LOC110530814
XM_021614088.2 mRNA upstream 31273 83875531 ~ 83882723 (+) False LOC110530812
XM_021614101.2 mRNA downstream 31963 83950870 ~ 83952733 (+) True tceanc2
XM_036986572.1 mRNA downstream 517581 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA downstream 517581 84436488 ~ 84931644 (+) False LOC110492646
XM_036986575.1 mRNA downstream 517581 84436488 ~ 84931644 (+) False LOC110492646
XM_036986576.1 mRNA downstream 517581 84436488 ~ 84931644 (+) False LOC110492646
TU857978 other upstream 8384 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 24359 83886814 ~ 83889637 (+) True G755363
TU857995 other upstream 127055 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 253950 83658097 ~ 83660046 (+) False G755298
TU857885 other upstream 259558 83653045 ~ 83654438 (+) True G755277
TU858056 other downstream 50471 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 343080 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 384563 84303470 ~ 84308274 (+) True G755602
TU858875 other downstream 639879 84558786 ~ 84561891 (+) True G756134
TU859041 other downstream 958087 84876994 ~ 84878079 (+) True G756271

Expression Profile