RNA id: XM_036986575.1


Basic Information

Item Value
RNA id XM_036986575.1
length 8503
RNA type mRNA
GC content 0.52
exon number 42
gene id LOC110492646
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 84436488 ~ 84931644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGAGCCGAGAGGCAGAAGCGTGACTGAAGGGGGACGAAAGAAGAAATAACTCCTTTACCGACGGAGTGTACCACGGTGGCGAGACTATGAACATGCAAGTAGTTAGCCAGAACTGCTTCTTCAAGAGGAAGGAGGATTCGTAAATCTTTAGAAGAGATTTGCTCCTTATTCGAGGAATTATATTAAAGACATTTTTGTTAACCCAGGATTATTCTACCGCGTGGTGCACTCTTAGTAGCTAAAGAAGAGGACTCCTTAGCTCCGTTGTAATTCTGATTTACTTGGAAGGTTGGTTGGCTTCTCGACGTTTTGAAAAGTGGATTTTTACCTTACCAGCTGCGGAAAGGGGGTGACCGAACGAAGTTGTTTCTGTGCGAGCAGAGAAACAGTCTCCAGACCCCGACCTCAACACCATACAGCTACAGAGGCCAAGCCCCCTCAAGACCTCTTTTGGACTGCCATGTTTTCAGGGACCTGTTGTTTCCAATGGTGTTGAATCACCCTCTGTTTTCAGgTGTCTGTGTTTGATCGTGTGAGGTGAGGTGTCTGTCTTCGTTGAGGGGAGCGAAGAGGAGTCGGCGTTTTGTGTCTTCGTTGAGGGgagcgaggaggaggagtcgCTGTGCCAACCTGGACCATCATGGTGCCAAACATTCACCCTGCAGTTCCCCTCCTGCCCAGGGGGGCGGTGCCATCCCTCCTGCTGCTACTCAGCTGCCTGGTGCTCTCCTCTCAGGCTGACAGCTTACCAAGTTTCGTCAAGTCTCCTGAGGACCAGACGGGTATATCGGGTGGTGTAGCATCCTTCGTGTGCCAGGCCACAGGAGACCCCAAACCCAGGATCACTTGGATGAAGAAGGGCAAGAAAGTCAGTTCCCAGCGCTTTGAGgTGATTGACTTTGATGACGGTTGTGGGTCTGTGCTGAGGATCCAGCCGCTGAGGACACACAGAGACGAGGCCATATACGAGTGTACTGCCGCCAACAGTGCCGGCGAGATCAACACTAGTGCCAAACTCACCGTGCTAGAAGAGAACCAGATCCCTCATGGGTTCCCCAACATAGACATGGGTCCCCAGCTTAAGGTGGTAGAGAAGACCAGGACGGCCACCATGCTGTGTGCTGCCAGCGGCAACCCTGACCCAGAGATCACCTGGTTTAAAGACTTCCTGCCTGTAGACATCAACAGCAGCAACGGACGAATCAAACAACTCCGCTCAGGAGCCCTACAGATTGAGAACAGTGAGGAGTCGGACCAGGGGAAGTACGAGTGTGTTGCCATGAACAACGCTGGAACGCGCTACGCAGCCCCAGCCAATCTCTACGTGCGAGtacGTCGTGTCCCTCCACGGTTCTCTATCCCACCCACCAACCATGAGGTGATGCCTGGGGGCAGTGTGAACCTGACGTGTGTTGCTGTGGGATCTCCCATGCCCTATGTCAAGTGGATCATGGGAGAAATCGAACTCACCAAGGAGGATGAGATGCCCGTCGGTCGGAATGTTCTGGAGGTGACCAACATCAAGGAGTCCGCCAACTACAGCTGCGTGGCCATATCATCACTGGGCCAGATCGAGGCTACCGCTCAGGTCTCCGTCAAAGccctCCCCAAGCCCCCCACCTCTCTCATAGTGACTGAGACCACTGCCACCAGTGTGACCCTAATCTGGGACTCTGGGAACCCTGAACCTGTGTCCTTCTTCATGATCCAGTACCGGGCTAAAGCCACCGACGCAGGCTTCCAGGAGGTGGACGGAGTAGCTACCACTCGGTACAGCATCGGCGGGCTCAGCCCCTACTCGGAATACGAGTTCCGTGTGATGGCGGTGAACAACATTGGGCGCGGGCCGCCCTCTGACCCGGTAGAGACCCGTACGGGGGAGCAGGCTCCCTCTTCACCCCCTCTGGCTGTCCAGGTCCGCATGCTGTCCGCTTCCACCATGCTGGTCCAATGGGAACCGCCCGAGGAACCTAACGGACAGATCAGAGGGTACCGCGTGTACTACAGTTCAGACATGAACGACCCTCTGAGTGGCTGGCAGAAACACAACACAGACGACAGCAGACTGACCACCATCTCAGGGCTGACCACTGATATCACCTACAGCCTCAGGGTGCTGGGGTTCACCTCTGTAGGGGACGGACCCCCCTCAGATATACTGCAGGTCAAGACTCAgcagggagTTCCTGCCCAACCATCCAGCTTCGAGGCAGAAGCAGAGTTGGATACTCGTATCATGTTGACCTGGCTGTGGCCTGTCCAGGACACCATCACTAAGTACGAGCTACAGTACTGGGAGGCTAACTCTGACAACAAGATCCACGTGACTTTTAACCCTGCGGGGTCATACGCCGTGGAGGGTCTGAAGCCCGACACCCTGTACCGTTTCTCCCTGGCAGCCCGCTCCGAGTTCGGCCTGGGAGTCTACACACAGCCCATAGAGGCTCGCACCGCCCAGTCCACCCCCTCCGCCCCCCCTCAGGAGGTGCACCTGTCCAGTCTAAGCTCCACCTCCCTCAAGGTGAGTTGGGTGGCTCCGCCCGCCGCGTCCCGCCACGGCGCCATCGTGGCGTACACCGTCAGCTACCAGTCCACCGGCAGCGCCAGCGAGGACCCCGAGCGCCACAATGTGTCGGGAATCGGAGCGGACGCCTCTAGTTATGTACTGGAGGGCCTGGAGAAGTGGACAGAGTACCAGGTGTGGGTTAGAGCGCACACTGATGTGGGCCCGGGCCCAGAGAGCGCTCCGGTCAGGATCAAAACTAAAGAGGACGTGCCAGGTGCCCCTCCCAGGAAGCTGGAGGTAGAAGCTGTGAACTCTACAGCCATCAGGGTAACGTGGAAGGCCCCCCTGCCAGGGAAGCAGCACGGCCAAATCAGGGGCTACCAGGTCATCTTCTCCAGGCTGGAGAACGGTGAGCCACGCGGTCAGCCCAACATCATGGACGTAGCCCTGCCTGAGGCTCAGTGGAATATTGAGGAGTCCACAGAGTATGAGGCCACCATCACTGGTCTGCACTCCGAGACCACCTACTCTGTTACCGTGGCAGCCTACACCACCAAGGGAGACGGGGCACGTAGCAAAGCTAAAGTCATCACCACCACCGGAGCAGTCCCGGGTCGCCCCACCATGATGATCAGCACCACTAGCAGTGACACCGCCCTGATCCAGTGGCAGCCTCCTAAAGACATGGTTGGAGAAATGATGGGCTACCAGCTGCAGTACAGACTCCGAGAGGACACGGCGTACACCTCACGAGAATTCAAACGGACGGTCGACCACCACACCGTCACCGGACTGCTCAAGGGCGCCACCTACGTGTTCCGGCTGAGTGCGTTGAACCGCGCCGGTACCGGAGAGGCCTATGTCAAGGAGATCAGCACGCAAGAAGACGTGCCCAGCGGGTACCCCTTAAAACTCTCCGTGACAGGGTTGACCACGTCGACCACCCAGCTGGCGTGGGATCCCCCAGCGCTGTCTGAGAGGAACGGGAAGATATTGCAGTATGTTGTGGTGTACAGAGACATCAACAGCCACACCAACAGCACCAACAGGACAGTGGACACACACATGACCATCCAGGGCCTGAAACATGACACCACATATGACATCAGAGTCCAGGCGTTCACCAGTAGAGGAGGGGGACCCTTCAGTCCTAGTATACAGAGCAGGACAACATCTACCTCAcctgcgtTTGCCACAAGCTTCGGTGTCAAAGCCGTCATGAAAACATCAGTCCTGCTCACATGGGAAGTGCCAGAAAACTACAAGTCCCAAGTGCCTTTCAAGATCCTGTATAACCAGCAGAGTGTGGAGGTACAGGGGAACCTGAAGAGGAAGTTGATCACCCGACTACAGCCTGACACAGACTACAGCTTCGTGTTGATGTCCAGAGGAAACACCGCCGGCGGTCTTCAGCAGCAGGTGTCCATCAGGACCGCCCCAGACCTCCTGAAGACTAaacctgtcctctactctactcagcACAACCAGGACGGGAAGCTCACTATAGACCTGCCTAAAGTACAGCCTACTAGTCAAGTCAGATGGTACTACATCGTGGTGGTGCCTGTGTCCCCGTCGTCGTCACGGCGATGGGAGAACCCCGACGAGATGGACCTGGAGGAGCTGTTGGAGTCCGGCGAGGGTCCTGTCCTGCGTCGTAGGCGCCAGGTCGAGCCCACGCGGCCGTACATCGCCGCCAAGCTGCCCTCCCTGCCCGCTACGTTCACCCTGGGAGATGAGAAGAATTACAACGGCTTCTACAACCGTCCCCTACCGGGTCACCAGCGCTACCTGGCCTTCATACTGGCTGCACTGAAGGAGCAAGACACGGACAACAGTGACAAACATagAAGGTTCTCAGCCAGTCCTTACTCCGACCCCATCCACGTGTCTCCTGACGTGTCCAGGACTGCGGAGCAGCCAGAGATGTTGTGGGTCCTGGGTCCTGTCCTGGCCGTGGTGCTCATCATCGTCATCGTTATCGCCATCTTGCTCTTCAAGAgCAAGCAGGAAAGGAAGCGAGCATCTCCCCTCCCCAAAGATGACCACTCAGGAGGGGTGAAGGACTCACTGCTGGGCAACTCTTCCGACCCTGTAGAGATGAGACGACTCAACTACCAGACACCagGTCCCAGTACTCAACGCTGTCCCAACACTCCAAGGATGAGAGAACACCCTCCCATCACTGTGTGTGATCTGGCGGACCACATAGACAGGCTAAAGGCCAACGATGGCCTGCGCTTCTCGCAGGAGTACGAGtcCATAGATCCTGCCCAGCAGTTCACCTGGGAGAATTCCAACATGGAGGTGAACAAACCAAAGAACCGCTATGCTAATGTCATCTCATATGATCACTCCAGAGTCGTCCTGACGTCTGTTGATGctgttcCTGGTAGTGACTACATCAACGCCAACTACATAGACGGCTACAGGAAACAGAATGCCTACATCGCTACGCAGGGCCCTCTTCCCGAGACCCTCAGTGACTTCTGGAGGATGGTGTGGGAGCAGAGGGCTCACACTATCGTCATGATGACACGACTGGAGGAGAAGTCACGCGTGAAGTGTGACCAGTACTGGCCTGTCAGAGGGACAGAGACCTATGGTATGATACAGGTCAGCATGTTGGATACTGTGGAGCTGGCTACCTACAGCGTACGCACCTTCGCTCTCTACAAGAATGGTTCCAGTGAGAAGCGTGAGATTCGTCAGTTCCAGTTCATGGCCTGGCCGGACCACGGGGTACCAGAGTACCCCACCCCTATCCTGGCCTTCCTACGACGGGTCAAAGCCTGCAACCCCCCTGACGCTGGGCCCATGGTGGTACACTGCAGtgCGGGCGTGGGTAGAACAGGCTGCCTGATCGTGATCGAGGCCATGCTGGAGCGTATGAAGCATGAGAAGTCGGTGGATATCTACGGTCATGTGACGTGTATGAGAGCTCAGAGGAACTACATGGTGCAGACTGAGGACCAATATGTCTTTATCCACGAGGCCCTGCTAGAGGCAGCCACCTGTGGCCTCACTGAGGTCCCCGCACGCAATCTGTATGCACACATCCAGAAACTCACCCAGCCGCCCACAGGGGAGACCGTCACCGCCATGGAGCTGGAGTTTaagagACTGGCTAACTCCAAAGCCCACACCTCCAGGTTCATCAGTGCCAACCTGCCCTGCAATAAGTTCAAGAACCGGCTGGTGAATATCATGCCCTTCGAGTCGACACGCGTGTGTCTGCAGCCTatcagaggagtggaggggtctGACTACATCAACGCCAGCTGCATCGATGGGTACagACAACAGAAAGGGTATCTGGCCACCCAGGGCCCTCTGGCTGAAACCACTGAAGACTTCTGGAGGATGCTGTGGGAACATAACTCTACCATAGTAGTGATGCTCACCAAACTCAGAGAGATGGGCCGGGAGAAGTGTCACCAGTACTGGCCAGCGGAGCGCTCAGCCAGGTACCAGTACTTTGTAGTGGACCCCATGGCTGAGTACAACATGCCCCAGTACATCCTCCGAGAGTTCAAAGTCACCGACGCCAGAGATGGCCAATCCAGGACGATCCGCCAATTCCAGTTCACTGATTGGCCAGAACAAGGAGTGCCAAAAACCGGGGAAGGATTCATCGATTTCATTGGCCAAGTGCATAAAACCAAGGAGCAGTTTGGACAGGACGGACCAATCACTGTTCACTGCAGtgcCGGGGTGGGCAGGACAGGTGTCTTCATCACTCTGAGTATCGTGCTGGAGAGGATGAGGTACGAAGGGGTGGTGGACCTCTTCCAGACCGTCAAGACGTTACGCACCCAGAGACCTGCCATGGTGCAGACAGAGgaccAGTATCAGCTGTGCTACAGAGCAGCTTTGGAGTACCTGGGGAGTTTTGACCACTATGCAACGTAACCACTCTGAGCTGAGCAGCCTCTGGCATGGCCACTGAGTGTCCCATCTCAGCCACCGTACTTGTATCAACCCATCTGACCTGACCCTGCCATTGCTACCCTatcacaggggaggagggagatgcCACTGTCACCTAGCGACGGGTTCAACCAATCCCAGAGGTCTACTACTCGGAtttacaacaaaacaaaaaaacacacaaaaaaaaaaaaaaaacaccctaaaGATTGCTTTACAAAACAAACCACAAACAATACCATGACGACGACGGCGTTTCATATGGGAGCAAGCGACAGTTCTGACTGAGTTTCTGTTCTCCTTTCTTACTTTATTATTATGAATAATGTTCTTATTATTATTTAGttaatcattttttttttgttttatatatataattgttttaATACCATCAGACATGTATTTTGTCTTAATGGCCTAACTGGGGCACAGCATTTTAGTTTTTCCACCTTTAATTGGTATGTTTATTTTAGTAAAAAAAGATATTAAAAAATGTTGTGTGTTATTTTAGGGACCTGTATTTTCTATTTCCTAGACGTTAATACAGAAGAGCCACTGTTTGTTCTCTGAAGCTGCTGACAGTTTTGACTTTTACCAagatttttattgtttattatctattttttttgtttgttgtcttTTTCGTTTTAAAACGGAGCAAGATTAACTAAGATAATACGCCTTCTCACTTTGCTGTTTCTTTTTAAAAcgtagggggggggggaatgacaAAATTATTCAGACGCATACACCAACCGCCGCGATACAGGTACTATATAAACCACACTAGCTAGCGAAAAAACGTGACATCAACTAACGACAACTAAATCAGCATTGTACAGAAACTCAAAGAGCACATGACGATTTCAACAACAGAGAGAAGCCTTGAAGGCATTGAGGCCTTCAATAACCAGAGAATGAATCTGGGAGACGAACGGACGAACAGACTTTTATACCCAACGAGGAGTTGAACTTGAGAATCAACTCCTTGAATCTCTGTATGAATCATATTGTGTCCCCTCTAAGCCCCTCCTCTTTCCTTGGGTTCCCAGCGAGCTGATTGGTCAGTCCGCTGCCTGGGGGTTGGAACATAGGGACTGCAGGAGCAGCTccccgtggtggtggtggagagaggAGTAGCAGCCATTAACCCTGGCCCCCCTGTACAGAATACTACAATTACTACCGGtgggacagagacacacaaaccCTCTGCACCCTCCAACCGACCTGCTATTATTTTATACAGAAATAGAAATgatgactatatatatataattctgattgattatatatatatatatatatatgtacaatTATACATAGATATATACTGCAGCTTCAAACTATATTGTTAAAATAATTCACTCTCTTTACTTACCAGCTTAGAGGAAattaaagagagaaagggaaagagagagagtgagagatggaaggagagagaaagttaGTGTCTGTATCTACTGGATTACCATAGCAACCTGACAGCCAGACAGAGTTGAGATCAGTGTTCCATTTTTCAATCCAGTCATTTTTCAGGGAGTGAATTCAATTCATGAATCGAAATTCGTTCATTTAGTTGTAATTCGATTCATTTAGTTGTAATTCGATTCATTTAGCTGTAATCGACTTCATTGAAACTGGACTTGACCCTAAACCTTGCTGAAAGATAGAGAGCAGGTTATCGTTCTgttaaagagagtgagagaggtgtaGATGTGTAGTTCTGTTAAAGAGAACAGCATAACCCCAACTGAGTACCACTCCCCAGCCTCCCCAGCCTCCGTCGGGCCAACCGCCACCACGCCACACAAGCACATCTTTACCCACAAGGCCGCAGGGCACGACGATCCCCAAAGCCTAACAGGACTGAGTCTGACATGCTGGCTGGAATAAACCACAATGTTCATTTATACCTTGTGAATGCTTAGTGCTGTAGGGGTTTCATCTGTTGTATACGCAGTCTGTTTTCTATTTGTTGATAAAGAACtggaattttaaaaaaaaaatatgttgctGGGGAAAAAAACTCGAATAAAGTTGaataattgttgttttttttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU858727 lncRNA upstream 46307 84389196 ~ 84390181 (+) True G756017
TU858704 lncRNA upstream 60131 84374448 ~ 84376357 (+) True G755995
TU858289 lncRNA upstream 83890 84352319 ~ 84352598 (+) True G755632
TU858288 lncRNA upstream 85425 84350684 ~ 84351063 (+) True G755631
TU858285 lncRNA upstream 88585 84347619 ~ 84347903 (+) True G755628
TU859072 lncRNA downstream 2634 84934278 ~ 84934616 (+) True G756296
TU859073 lncRNA downstream 3534 84935178 ~ 84935486 (+) True G756297
TU859076 lncRNA downstream 5149 84936793 ~ 84937744 (+) True G756298
TU859077 lncRNA downstream 6188 84937832 ~ 84938108 (+) True G756299
TU859078 lncRNA downstream 6561 84938205 ~ 84938484 (+) True G756300
XM_021614101.2 mRNA upstream 483755 83950870 ~ 83952733 (+) True tceanc2
XM_021614096.2 mRNA upstream 517581 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 517581 83913996 ~ 83918907 (+) True lrrc42
XM_021614093.2 mRNA upstream 533207 83895686 ~ 83903281 (+) False LOC110530814
XR_005052978.1 mRNA downstream 11330 84942974 ~ 84964998 (+) True LOC118965569
XM_036986892.1 mRNA downstream 34582 84966226 ~ 84970196 (+) True LOC110531029
XM_021614102.2 mRNA downstream 41953 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA downstream 42063 84973707 ~ 84978102 (+) False capsla
XM_036986587.1 mRNA downstream 42510 84974154 ~ 84978102 (+) True capsla
TU858258 other upstream 128214 84303470 ~ 84308274 (+) True G755602
TU858237 other upstream 173522 84261987 ~ 84262966 (+) True G755585
TU858056 other upstream 465791 83969378 ~ 83970697 (+) True G755428
TU857978 other upstream 530876 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 546851 83886814 ~ 83889637 (+) True G755363
TU859074 other downstream 4422 84936066 ~ 84937744 (+) False G756298
TU859075 other downstream 4422 84936066 ~ 84937147 (+) False G756298
TU859221 other downstream 325138 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 1020324 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 1186019 86117663 ~ 86117948 (+) True G757663

Expression Profile