RNA id: XR_005052978.1



Basic Information


Item Value
RNA id XR_005052978.1
length 1060
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118965569
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 84942974 ~ 84964998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggggaaagggaggagTACGAGTAAGTTGGAAGAAGGGAAAAAAGAGGATAGGGCGGTGGAGCAACAGTTGGGAAGAGAGGCAGCTGAGAGGCTACGTGCTCCAGTGAACTATTCTCCAGAACCCATCTCATCTAGTGATTCAAAGCCTTTTCCTTACTGTGGTCTCGCCCACTCTGCTTGTAGCCTTGCTGTGACTGGTGGAGGAGCATACAGCTGAAGAGTCATACACAAATATGAGGCTCACTCATCACTTCTTCAATCAAGATGTGAATTTCTACCAGATTTAACGTTTGGAAGAGTCACACCACAATGAATGGATGAGAGAgacgagcgagagagcgagagagcgagagagagaatcaacACAATCACTTCAGCGGCTGCAGTACACATGGATCCAGAGgattgagaggaggagagggacacacGGTGGTTTCCTTCCCCACTCCGAGGCCACGATGCTGGGCTTATCCCGTCGCCGGCTCCTGCCTGCTCCAGAGTTCAGCTGGAGAAGACGATGCTAGGCAGCTAAATCTGGATTAACAGACCTGGGCAGACGATTTTCAATGCTCCTCCAAATTCTAAGATGAAGTTATGGAAAGGCGCCAGTTTTGTCTTCATGCTGTGTGCTACGTTACTGTTCCTCCTCCTCACTAGAAACATCCTGGTTACTACTGGACCTGCAAGACTTCAACCTAGGATGGCGTTGtcgtcatcatcttcatcatcaccatcatcatcatcattatcgtCAAAACCACTGTCACTATCAGTGACAAAGCCaataccacctccaccaccattaTCTTCAGTagcattatcatcatcatcaccattattatcatcatcatcatcatcatcgtcttcCTCCTCATCCAGGATAAAGGCTGGGCTCCACAGAACAGTGCGGGCTGTAGACACCatcagctctctcctctcccagtgtAAGTTAAAATAAACAGTTTTTGTTTCCATAGTCACCGGGGTGTTATAGATGAGGTGGTGTGGGGAACGGTTGTCATGGCGCTGACAGTGTGGCTTAGTGACTCCGGTTGAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU859079 lncRNA upstream 4179 84938501 ~ 84938795 (+) True G756301
TU859078 lncRNA upstream 4490 84938205 ~ 84938484 (+) True G756300
TU859077 lncRNA upstream 4866 84937832 ~ 84938108 (+) True G756299
TU859076 lncRNA upstream 5230 84936793 ~ 84937744 (+) True G756298
TU859073 lncRNA upstream 7488 84935178 ~ 84935486 (+) True G756297
TU859110 lncRNA downstream 39718 85004716 ~ 85004916 (+) True G756329
TU859129 lncRNA downstream 80381 85045379 ~ 85045702 (+) True G756348
TU859133 lncRNA downstream 88793 85053791 ~ 85054430 (+) True G756352
TU859154 lncRNA downstream 150537 85115535 ~ 85131519 (+) True G756372
TU859174 lncRNA downstream 198615 85163613 ~ 85165864 (+) False G756388
XM_036986572.1 mRNA upstream 11330 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA upstream 11330 84436488 ~ 84931644 (+) False LOC110492646
XM_036986575.1 mRNA upstream 11330 84436488 ~ 84931644 (+) False LOC110492646
XM_036986576.1 mRNA upstream 11330 84436488 ~ 84931644 (+) False LOC110492646
XM_036986577.1 mRNA upstream 11330 84436488 ~ 84931644 (+) False LOC110492646
XM_036986892.1 mRNA downstream 1228 84966226 ~ 84970196 (+) True LOC110531029
XM_021614102.2 mRNA downstream 8599 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA downstream 8709 84973707 ~ 84978102 (+) False capsla
XM_036986587.1 mRNA downstream 9156 84974154 ~ 84978102 (+) True capsla
XM_036986589.1 mRNA downstream 37399 85002397 ~ 85107517 (+) True LOC110531035
TU859074 other upstream 5230 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 5827 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 64895 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 381083 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 634700 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 291784 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 986970 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 1152665 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1265353 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1566155 86531153 ~ 86532379 (+) True G757902

Expression Profile