RNA id: XR_005052983.1


Basic Information

Item Value
RNA id XR_005052983.1
length 2257
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118965572
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85256782 ~ 85264093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAATGAATGAGAAGAATGCTGTAATATAATTCTGTGTGAGGATAGAACAGTAGGAATGAGgacaggttgtgtgtgtttagACAGAAAGTCCAGAAGAGGGAGCGCGCAGCCCTCCTGTGACAGAGTATAAAGTTGAAGAAGGGTGCCTGTGACTTCTTCTGGCTGGCCAAAAGTGATCCTCTATCACAGTTTAATACATTTACAGTGATCCCTATCATAGTTTAACTACTATTAGGCAGAAGGAACGAAATTAAGGAACATCAAAGTAAAATAAGTTATAAGCAAAGATAAAAACACAGTGATATTTGAGGTGCTGTACTAGAATAAGACATTAAGGCTTTTGTAGTATTCAGTAATACAGTTGTAGACATTATAGAGTAGGTTTTAAAAGGAGGTATTAAGTGATGTGactaataaattattatttgggAAAGTAGGGTAGCTCTACCTTGGGAAATAGTAAATAAAGTGTAGAATGCGATGGGAGTGTTTAGGAAAAATAAATAGTGGCATGGAAACAAATGGACTGTTTCTCCCTGGAATATAGAGATAGCAAAATTTAATAAAGCCATAGAGTCACTGAAAGAAACACACATTAATTCTACCAATTCGGCTTGAATATGAAAGAGCAAACCGTATAATGTAGGGCAACATTACCCGGTAAAcaggataaataaaataatgaattggAACGATCACATAAAACCATAACAAGACGCTTAACTTACCAGCGTTTTAATGATAATTAACATTATATCATCAGAAATACATTACGATGGGGGACAGATATGATTCTGCTTGCCATCGCAGACGTGCGAATGGTTTGCAAAGCTATAGAAAATATCTAAGCGTAAGAAGTTGTAGATGTGGAGCTAACAAGTATGGGGGAAAATGAGTGTAAGATGACACTGGAACttagtgcggtagcagagaatgCCTCTATACAGGAGTTTGTACCCTTTTCAAAAGAGCAACAACTAATCGTTTTAAGGAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATGGGCTGAATTCTGGAGACTGAGGGTACATGAAGATACACCGGGCTGGGGATATACTTCATACAGCACCTGCAGTGGTAAAGATCGTCATGTCTCTCTTTGGTGGGTGCATAAGTTTCACAAGAAGTAAGGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACGtgaaacaaaagagagagaaagagagagactagattcCACTGTAGACATACTGGGTTGAGTTTGGGGGTTACTTGTTTTATTTGTTAATGTATCATGTGAAAAAGGATAGATGTTAGGGTAGTTGTACTCTAAACAACATGTTGAAGGCTCGATGTGAAAGCCCATACAGTGTTGAATTACTTCAAGAAGAAATAATGTTGACTAAGGTTATGCATATCAGTTGAAATAGAGCAGATGGGGAACTAAGTAAAAAAATGACATGATTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTATCCTGGAGGCATAgagtcaggtgaagagagagtgggaattgtCATGGTCTCAGATTTCAGTATTCATGAATACAGTCATGCATAACACATAACATTGTCAATACTGTTATGTTTTGTCCTTTGTTTTCCAAGTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCGCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGATAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCACAGAAAGAAGGCAGAAACCTGAACCAGGACGAGAGGTTCCACATCTGATGATCCTAGGGGACCAGAAGGACCTCTCCCAGTGATACCAGGAGATCTAGTCTACGTTCGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGAGAAGGACCCTACGAGGTGGCAATAGCCACAAACACGGCCGTCTAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGGCGGGACCCCGGAGGGAGCAGGAGCAGCGGAAACGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACTAGATACAACGAGTGCATCAACTAAACGCACTCAGAAGAAGCACCAGGGGAAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859249 lncRNA upstream 10401 85247286 ~ 85247912 (+) True G756428
TU859248 lncRNA upstream 11723 85246304 ~ 85246590 (+) True G756427
TU859247 lncRNA upstream 15370 85242712 ~ 85242943 (+) True G756426
TU859246 lncRNA upstream 21018 85237072 ~ 85237295 (+) True G756425
TU859234 lncRNA upstream 50488 85207567 ~ 85207825 (+) True G756420
TU859263 lncRNA downstream 61722 85325121 ~ 85325333 (+) True G756440
TU859264 lncRNA downstream 62181 85325580 ~ 85326369 (+) True G756441
TU859265 lncRNA downstream 64894 85328293 ~ 85328617 (+) True G756442
TU859271 lncRNA downstream 90631 85354030 ~ 85354275 (+) True G756448
TU859277 lncRNA downstream 96505 85359904 ~ 85360207 (+) True G756454
XM_036986598.1 mRNA upstream 23867 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA upstream 30682 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA upstream 30682 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA upstream 30682 85215773 ~ 85227631 (+) True xirp1
XM_036986590.1 mRNA upstream 113936 85124558 ~ 85144377 (+) False LOC110530843
XR_005052984.1 mRNA downstream 25380 85288779 ~ 85290009 (+) True LOC118965573
XR_005052985.1 mRNA downstream 52510 85315909 ~ 85317139 (+) True LOC118965574
XM_036986605.1 mRNA downstream 101334 85364733 ~ 85410339 (+) False LOC110530835
XM_036986604.1 mRNA downstream 106152 85369551 ~ 85410339 (+) True LOC110530835
XM_036986607.1 mRNA downstream 121506 85384905 ~ 85387224 (+) False LOC118965575
TU859074 other upstream 320569 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 321166 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 380234 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 696422 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 950039 84303470 ~ 84308274 (+) True G755602
TU860498 other downstream 688569 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 854264 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 966952 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1267754 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 1371385 86634784 ~ 86635460 (+) True G758045

Expression Profile