RNA id: XM_036986614.1


Basic Information

Item Value
RNA id XM_036986614.1
length 2481
RNA type mRNA
GC content 0.48
exon number 12
gene id hhatla
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85464402 ~ 85505892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaccctagTTCGCAACATCCTCGACTGCTGCGCCTGGCTATCACAGGGGGTACGGCACCGGCGTTACCAAAAGCAGGGACGAATGAATTAGAAAAACAAAACGCCTTACAAACCCAAACCCCTTTTACTTCTTATTTTTTGTTGACATtttggggagagggacagcaatACACCTTGTAACCTGTCCTGTGGCTGAGAAGCGGATAGAAAGGTCCCCTGTGTGTGTTTAGTGCCAGAGATCCACCATGAGGCTCAAGGCAGCCCTTCCTAAGCTGGAGCTGTACCTGTACGCAGCGGtgctctacctgtctctactaTGGGCTGGTACCTGGATCTGGGACGCATCCGCTGaCAATGTGAACAGAAAAGTGTTCAAGAAGAGCGTGAAACCAGGATGGCACTACTTTGGAAGGAAAATGGACGTTGCTGATTTTGAATGGGTGATGTGGTTCACAACATTCCGCAATCACATCCTATTCGCCCTCGCCGGTCATGTGATCTTTGCCAAAGTCTGCTCCCTGATATCTCCCAGGCACAGGTCGTTGATCTATGGGTTGTACGGTGGCTTGGCGGTGCTGGTCAGTATGGGAGGGGGCTTCCTGGCTCTGGTCCTTTCACACTGCTTCATCCTCTACAGCGTGGCTCTGGTCAAGAGGAAGTGGATCGTCTTCGTCGCCGGTCTCGCCAGCCTGGCCAGCTTCAAGATGGAACCTTTTAATACTTGGCAGGAAGGTTTTGTGACGGGCTACTTCGACCTGCAAGACATCCTGTTCTACGGAGGATCCTGTTTCACCATAATGCGCTGTATGAGCTTTGCTCTGGAGAACTGTGAGAAGAAGGATGGCAACTACACCTTCATTGACCTGCTCAAATACAACTTCTACCTTCCATTCTTCTACTTTGGACCCATCCAGACTTTCGATCAGTTCCATGTTCAGgccaacAACCCTAACCTGACCCGTAAGCAGAGAGAGATGTGGAACATTACCACCGGGGCTTTGTTGCACTTGGGAGCCATTTTTGTGGTGGACGTGTTCTTCCACTACCTGTACATCCTGACCATCCCCAACGACATGAAGCTGGTCAAGCAGCTGTCCGACTGGTCCTTGGCTGGCCTGGCCTACTCTAACCTGGTGTATGACTGGGTGAAGGCAGCGGTGATGTTTGGGGTGATCAACACTGTGGCCAGACTGGATCATCTGGATCCTCCTCAGCCTCCTAAGTGTATCACCATGCTCTACGTGTTCGCTGAGACGCACTTTGACAGAGGCATCAATGACTGGCTGTGCAAGTATGTTTACGATTACATTGGAGGAAGCCACAAAAATATCTTCAAGGAGCTTGTGGCGACCATCTGTACGTTCGTTGTGACCACTTTGTGGCTGGGTCCATGTGAGCTGGTCTACATCTGGTCGTTCTTCAACTGCTTTGGTCTCAACCTGGAGCTCTGGGTGGACAAGATCTTCTCCTTACCTCCCTTCTCCAACATCGAGTATGCCATAGGTGAGGCCATGTCTCGTAGAATCAGAGCCGTCTTCGGGGCCCTCAACTTCTGGACTATCGTCCTCTACAACGTCCTGGCTCTCAACAGTCTGGAGTTTGCCAAGCTGGTGGGAAAAAGACTGATCGTCCAAGGTTTCCCTCTGTCCACCCTGTCTGTACTGTTTGTGACCTACTGTGGTGTTCAgctggtgaaggagagggagagaaaacaagcCTTTTTGGATGACCCCGAGCCAGCGGCCGTGCCCCAAGACATGCCTGAGGAGGTCGGAAAAATGAAAGCTGAGTAAACGCATAAACAAGGAGAAAACTTCATTTTGTTTTTTGAGGACCTGGTTTTCACATCAACaatcaacaacccccccccccccccccctcccccaccaccccccaGCCCCTTTCAATTTTTTACACCCTTGAGCTTCCATACTGTACTGAATCGTACCAGACTGTCACAAGTCACAGGTAATCATCGTCGTGGCAactcttctactactactactactaccaagtTGTCACCATGACAACTACTACTCTACCACTCTGTTGGTTTTGAAAAAACAAAgcattatttaattatttttaacTGTGAAAAGTCCTGAAGTGCACTTGCTGTAGATAATCGTCATTTGACACGTACCCTCGTCCTTTTTGGTACATACACCGAAGGTACATTTTTGTATATTCATATGAAACAAAAGATGGATATCAGGAAATTGAAGAGAGACAAGGGAAATATTTTATGCAGACACAGCTGATATATTGACATCACATGTtcttattcagagcgacttacagtagtgattgTATCCATTTTTTTGTACCGGTCcccagtgggaatcaaacccacatccTTGGCATTGCACGTTGTTGTCAAACACCTCTGAGCCAAATGTCTCTACATTTTGTTCAAGTGTCATTTATGTCTGTTTTTAATGTACCAAAACTATTGCAGTAATACAAAACTGAAACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859217 lncRNA upstream 59491 85413435 ~ 85414616 (+) True G756404
TU859277 lncRNA upstream 113900 85359904 ~ 85360207 (+) True G756454
TU859271 lncRNA upstream 119832 85354030 ~ 85354275 (+) True G756448
TU859265 lncRNA upstream 145490 85328293 ~ 85328617 (+) True G756442
TU859264 lncRNA upstream 147738 85325580 ~ 85326369 (+) True G756441
TU859358 lncRNA downstream 29537 85535429 ~ 85536085 (+) True G756520
TU859371 lncRNA downstream 47532 85553424 ~ 85607980 (+) True G756532
TU859376 lncRNA downstream 54451 85560343 ~ 85561326 (+) True G756536
TU859349 lncRNA downstream 127347 85633239 ~ 85633927 (+) False vipr1a
TU860175 lncRNA downstream 128641 85634533 ~ 85637305 (+) False vipr1a
XM_036986605.1 mRNA upstream 63768 85364733 ~ 85410339 (+) False LOC110530835
XM_036986604.1 mRNA upstream 63768 85369551 ~ 85410339 (+) True LOC110530835
XM_036986606.1 mRNA upstream 86830 85384905 ~ 85387277 (+) True LOC118965575
XM_036986607.1 mRNA upstream 86883 85384905 ~ 85387224 (+) False LOC118965575
XR_005052985.1 mRNA upstream 156968 85315909 ~ 85317139 (+) True LOC118965574
XM_021614116.2 mRNA downstream 5490 85511382 ~ 85525239 (+) False klhl40a
XR_005052987.1 mRNA downstream 5490 85511382 ~ 85525239 (+) True klhl40a
XM_036986615.1 mRNA downstream 26267 85532159 ~ 85635705 (+) False vipr1a
XR_005052988.1 mRNA downstream 26267 85532159 ~ 85638054 (+) False vipr1a
XR_005052989.1 mRNA downstream 26267 85532159 ~ 85638054 (+) False vipr1a
TU859221 other upstream 210014 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 536363 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 536960 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 596028 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 912216 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 446076 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 611771 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 724459 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1025261 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 1128892 86634784 ~ 86635460 (+) True G758045

Expression Profile