RNA id: XM_021614116.2


Basic Information

Item Value
RNA id XM_021614116.2
length 2844
RNA type mRNA
GC content 0.48
exon number 10
gene id klhl40a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85511382 ~ 85525239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGGAGGTCATTTTACACACTCACCAAAATGGATTCCTCAGCTTTGTGAGTCCCCAACTATAAATAGTGAAGTAGAGCACACTAATGTTCTCCAAAACACACCTGACAAAGATTCTTTTGGGATTGAAACATTGTGAACTATGAAAGGTCTGTGTTGGAGAAAAGGAGTGTGACGCATCTACTTAATGACTACAGGGTCTTTCCAGTATGTAAAGTTATGTGTGTGTTGACTACATATGCTATATTATCTATAAATACACTCTGAGTTGGAGAGACTGACAGCCACAGACAGCTGCAGGAACTGCTACCGATGTGGACTAGCTAGCTGCCCCATTACCCAAcctcatctctcgctctctctctctctctcactctctggacTGTACTGTGAAAACAGGCAGTACTGTGCTATCCTGTTGTGGGGAGCGAGCAGGGATCATACCCTCTTCGTTTTAGAAATCTttcccacaaaaaaaaacatctgcaAGTTGATAGGATGTAAGAGAGGACCTGAGGAGAACCtaacagaaaaaaaaacaagatgGCTGCCTTATCGATAGACCCGGTGGAACAGCCAAGGATGTACCAGCAAACCCTGCTTCAGGACGGCCTCTGTGACCTGCTGGAAAACCAGAAGTTTGTAGACTGTGTCTTGAAGATCCAGGACAGGGAGTTCCCGTGCCACCGCTTGGTCCTCGCTGCCTCCAGCCCCTTCTTCAAGGCTATGTTCCTGTCCAACCtggaggaaggagggaagaagGAAATCGTTCTGAAAGACGTGGAGCCTGGCGTCATGGCGATGATACTGCGTTACATCTACACCTCGGacatcaacctgacagagcagaACGTCCAGGATATCTTCATGGTGGCCAACATGTACCAGATCCCGTCCatcttctctgtctgtgtctcctaCCTACAGGAGAAGCTGGTGCTGGGGAACTGCTTGGCTATCTTCAGGCTGGGGCTTCTGTTGGACTGTCCCCGCCTGGCTTTCACAGCTAGAGAGTTCATCTGTGAGCGTTACCAGCTCATTATCAGGGACCAGGATTTTCACCAGCTGGGCCCCAGCGAGCTGGCAGCCATCATCACCTCCGACGCACTCAACGTGGACCGAGAGGAGGTGGTGTTTGAGTCTCTGATGGACTGGGTGGGCTACGACAGAACGGAGAGGGTGAAGGAGCTGCCAGATCTCCTGCATTGCGTCCGCTTCCGTCTGATCCCGGTGGATTACTTTACGGAGAAGGTTGAAAATCACAAGTGGATTCAGGCCAACACGGAGGTCAAGAAAGAGCTGCAGCTGATCAAAGACGCCCACAAAGGAAGACTCCCAGAGGTCCAGAGATCAAGGAACAGGAAGTCCAAGATGGCAGGTGACAAGGAAGATGAAGAAGACTCTGATGATGAGCAAGGTTTGCTTCCGGGGATTCTGAACAATAACCCTCGGTTTGGGATGTTTGAGACGGACCTGATCCTTATGATCAGCGACACGGGGAGCGTAGCGTATGACCCGGTGGGGAACGAGTGTTTCGTGGCGTCTGAGTCGACAGAGATCCCTAAGAACCACTGCAGTCTGGTAACCAAGGAGAACCAGGTGTTTGTGGCTGGAGGATTCCTCCTCAACGAGGACAACAAGGAAGAACCACTCAGTTCCTACTTCTTACAGtttgACCCTGTGAGCGGAGAGTGGCTGGGGATGCCCTCACTGCCAGGACCTCGCTGCCTGTTTGGGCTGACTGAAGCAGAAAACTCCATCTTTGTTGTGGGCGGCAAGGAAATGAAAGAGGGAGAACACGTTCTAGACTCTGTTATGATCTATGACAGGCAGTCATTTAAATGGGGCGAGTCAGACCCTCTTCCATACACAGTCTATGGTCATGGAACTGTCTCGCACAATGGCCTTGTCTACGTCATAGGAGGAAAGGCAGAGAGCAAGAAGTGCATACGGAAGGTGTCTGTCTACAATCCCACTAAGTTTGAGTGGAAGGAGCTAGCTCCTATGAAGCTGGCTCGTTCTCTGTTCGCTGTGACGGTCCACAATAACCAGATCTACGTGGCCACGGGCGTTACAGACACAGGACTCACCAGCACTGTAGAGGTCTATGACATCGCTACAAACAAGTGGTCAGAGTTTGTAGAGTTTCCCCAGGAGCGTAGCTCCATGAACATGATCAGCATGGGAGAATGTCTGTACGCTGTGGGCGGTTTCGCCATGATGCCCAGCGAGACCAGCGACGAGCCACAGCCCACTGAGATGAACGACATCTGGAGATTTGAGGAGGACTGCTGGAATGGGATTTTGAGAGAGATCAGCTATGCTGCAGGTGCCACGATTCTCGCCGTAAAGCTCAATACACTTCGTCTCACCAAGATGTGATCAGCtctataaatgttttttttttttttttaaaagaacaCTGGAGATGTTCTCAAACCTAGAATGCCATGTGTTAGAACACGGCTGGAGTAAAAGCCATGTGTTAGAACACGGCTGGAGCAAAAGCCGTGTGTTAGAACACGGCTGGAGTAAAAGCCGTGTGTTAGAACACGGCTGGAGTAAAAGCCTTCTACACCCCAGTAACTCTTCAGCAGGACGGTTGGCCACCGTTGCTACTCTGCTAATGGCAAGGAGCCTCTTCAAATAGGTTGCTATGAAAGTTGTCTTTATTCTACTGTATCAAAATGAACAATTTGTTTATTTGAACTGAGCTAATGGTAATTGTTTTGACGGTTAGTATACGATTTGTATATTACTGTTTGTTTTGTAACATGCTGTTCTTCTTTTATTGTTTAACTTCTTTATATGAAGCACAAATAAAGATTATGATATCGGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859337 lncRNA upstream 21523 85489250 ~ 85489859 (+) False G756506
TU859338 lncRNA upstream 21523 85489250 ~ 85489859 (+) True G756506
TU859336 lncRNA upstream 22516 85483597 ~ 85488866 (+) True G756505
TU859217 lncRNA upstream 96766 85413435 ~ 85414616 (+) True G756404
TU859277 lncRNA upstream 151175 85359904 ~ 85360207 (+) True G756454
TU859358 lncRNA downstream 10190 85535429 ~ 85536085 (+) True G756520
TU859371 lncRNA downstream 28185 85553424 ~ 85607980 (+) True G756532
TU859376 lncRNA downstream 35104 85560343 ~ 85561326 (+) True G756536
TU859349 lncRNA downstream 108000 85633239 ~ 85633927 (+) False vipr1a
TU860175 lncRNA downstream 109294 85634533 ~ 85637305 (+) False vipr1a
XM_036986613.1 mRNA upstream 5490 85464402 ~ 85505892 (+) False hhatla
XM_036986612.1 mRNA upstream 5490 85471424 ~ 85505892 (+) False hhatla
XM_036986609.1 mRNA upstream 5490 85474105 ~ 85505892 (+) False hhatla
XM_036986608.1 mRNA upstream 5490 85474106 ~ 85505892 (+) False hhatla
XM_036986614.1 mRNA upstream 5490 85474107 ~ 85505892 (+) False hhatla
XM_036986615.1 mRNA downstream 6920 85532159 ~ 85635705 (+) False vipr1a
XR_005052988.1 mRNA downstream 6920 85532159 ~ 85638054 (+) False vipr1a
XR_005052989.1 mRNA downstream 6920 85532159 ~ 85638054 (+) False vipr1a
XR_005052990.1 mRNA downstream 6920 85532159 ~ 85638054 (+) False vipr1a
LOC110530830 mRNA downstream 92365 85617604 ~ 85618327 (+) True LOC110530830
TU859221 other upstream 247289 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 573638 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 574235 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 633303 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 949491 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 426729 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 592424 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 705112 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1005914 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 1109545 86634784 ~ 86635460 (+) True G758045

Expression Profile