RNA id: XR_005052989.1


Basic Information

Item Value
RNA id XR_005052989.1
length 5564
RNA type mRNA
GC content 0.46
exon number 15
gene id vipr1a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85532159 ~ 85638054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTTCCGAGGCGCACCGACAGGGTGCGGTTCCCTTCTGACTTCGCTGTCCTTGCTCCTCAGTGGAGAAGTGGTTCAAAAGTGTGTCCACCACCGTGAGAGTTGAAGATTTGATCACAGCGCAATACGCACGCTCATACTAACGATCCGAGGTGGCTACAATAACTTATCACAGAGTTTCTTTATTCGAAATTATAGTGAATGTTCGTGTTCAACAGCCTGTACAGTTTTATCTATCTTGGATATTAAAAAAAGACAAATCGTTTCTTTATCGACCAGCGTTATGGATGTTTCTAAAGGTGTCTTGATTTTCACTCTAGTCTGCACGTTGCGACCCATGCTGTCCATTCAGATATGTGACATCATGCTGGAGatggacaaggagagagagacgtgcATGGCCCAGTTAGAAAACATGACAACAGgttGCAGTGGGATGTGGGACAAGGTGGCCTGCTGGCCCAGCGCCAATACAGGACAGGTGGTCACCATCCCCTGCCCTGTCTACTTCTTATACTTGACCAACGACTTCATCATGGGTAACCTGTCGAAGACCTGCACCAGTGATGGCTGGTCTGAGGTTAGCCCTGCTTCCTATGCACTGAATTGTGGGTACAACGCCAATGTCACCAAAGTTGATGATGATGACAAGGCGGAGTTCTACTGGGCAGTGAAAGTAGGCTACACTATcggacacagtctctctctcatctccctcactaTCGCTATCGTCCTACTCTGCACTTTTAGGAAGTTGCACTGCACCAGAAACTACATCCACATGAACCTGTTTGTGGCGTTCATACTGAAAGCCATTGCCGTCTTCATCAAAGATGTGGTTTTATACGAGGTCGCGGAGTCCGACTGTCAACCTGAAACTGTGGGATGTAAGGCAGGGGTTGTCTTCTTCCAGTACGGCATCATGACCAGCTACTTCTGGCTATTGGTCGAAGGCCTCTACGTCCACACCCTATTGGCTGTCTCCTTCTTCTCCGAGAGGAAGTACTTCTGGTGgtatattctgattggctgggGAGCGCCAACTGTTTTCATCACAGCTTGGGTTATTACAAAGGCTTATTTAAAACACTCTGGGTGTTGGGACATTATTAACGACCATCCCTGGTGGATCATCAAAATGCCAATATTACTGACCATACTgGTCAACTTCATCCTGTTCATCTGTATAATCCGGATCCTGCGTCAGAAAATGAATTGCAGAGACATAGGAAGGAAGGAATCTCATCAATACTCGAGGTTGGCTAAATCCACACTACTGTTGATACCTCTGTTCGGAATCAACTACATCATCTTTGCCTTCATCCCTGAAGACATCAACACTCGAATCAGGATGGTCATCGACCTGATTCTAGGATCCTTCCAGgGGTTTGGGGTTGCAGTCCTGTATTGTTTCCTAAATGGAGAGGTGCAGGGGGAGGTGAAGCGTAAGTGGCGGCGATGGCACATGCAAAGGTTTCTGGGTAAAGGAGACACCAAATACCAGCAGCCCCAGTATCTGGGTAGCAACGGTAATAACTTCAGCACTCAGATCACCATGCTGACCAGGTGTAGCCCCACCACACGTCGAGCTTCCGACTGCCAGGAACACTTCTCTGCTATCTGAGCCCAGCTCTGGGTGGTAACAGAGggcagagaagaggaggaaacagaGATGAGCTGCACTGAAGCGCTGTTTAGTATTCAGTCAGCACAGTAGAGACCACCAGCCAACCACACACAACAACAGCAATGATAGGCTTAGATCAGGAAAGCCGCGGACCAATTTAACACAATTTATTTAGCTTGTTTTttgtttaatttaggaaatcaGTTCCCAAGTattcatacaaaaaaaaaaaaaaagagagacatCGTGTCTCAATataatcaaggtatgaaattattgttattttcaaaatgtctttttgggcttagttgtggtTGCAGTGTACACATTTTTacatggggcagcaggtagtctagcggttagaGAGAAGCGAGCCAGCAACCGAAGGTTTGCCCGGGTCTGACGGGAAAAATCTGGCAAAAAGTGAGCTGGCAACCGGAGGTTTGCTGGTATCAACacacttaaccccccccccccccacaacaacagctcccCAGGCACTCAGTGTGGCAGCCTCGACACCTCCAaaacctgtatactgtatgtatgtatgtatgtatgtatgtgtgtctttcggaggggttgggttaaaagcggAAGTTACATTTCGGTTAGACGTTGTTGACGAATAAAGTGATCTAAAGCTTCATAACAATGTTCCGGTCCTCCAACCGGCCGCAATGACAAAAATCAGCCGTGGCTAAATCTAGTCACCTAATCCCTGGTCTACACTATGTGTTAAATCCAAAAAACCTTCCAGTTTGAATCACCATTggatatatctgtgtgtgtattgagTGTTGTGTTAGTCCGTGTGGCAGGGTTGAAGTCAATTCCATTTTAATTCTAGTCAAATTCAGAAAGTAAAACCAAATTCCAAATTTTAATCATGGAAAACCATTcaagagaattggaatttcagtgtacttcctgaattagaaatggaattgaccccaactctgCTGTGTGACTTGAGATAATCGTAACTTTACATTGGTCTCATGAGCTAGCTACAgaagcctgatcccagatctgtaacatactgtatgtgctttAGCCAGCTTCTTTGTCATacatgtttgacatgacaacaaatGAACATGAACAGAGAAGTTGGCTAACAGAAGAGCAACCGGTTAGGAGCTACGGCTAGGTATTAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTATGAGCTAGGACTGGGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGAGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTATGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTACGACTAGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCCAGGAGCTAAGACTAGGTAACTGGCTAGGAGCTAGGACTGGGTAACAGGCCAGGAGCTAGGACTGGGTAACAGGCCAGGAGCTAAGACTAGGTATTAGGCTAGGACTGGGTAACAGGCCAGGAGCTAAGACTAGGTAACAGGTTAGGACTAGGTAACAGACTAGGCGCTTGGACTAGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCCAGGAGCTAAGACTAGGTAACAGGTTAGGAGCTAAGACTAGGTAACAGACTAGGAGCTAGAACTAGGTAACAGACTAGGAACTAGGAGTAGGTAACAGACTAGGAGCTAGGACTAGGTAACAGGCTAGGAGCTAGGACTATGTAACAGGCTAGGAGCTAGATAACAGGCTAGGTGATAGGACTAGGTAACAGGCTAGGAGCTAGTACTCGGTAACATGTAGGAGCTAGGCAACCGGCTAGGAGCTAGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGTATGGAGATAGGTAACAGGCTAGGAGCTAGGACTAGGTAACATGCTAGGAACTAAGACTAGGTAACAGACTAGAAGTTAAGACTAGTTAACAGGCTAGGAGCAAGGTAACAGGATAGGAGCTAGCTAACAGACTAGGAGCTAGCACTAGGAAACAGGCTAGGAGCTAGGACTAGGTAACAGACTAGGAGCTAGGTAACAGTCTACGACCTAGAATTAGGTAACATGGTAGGACTAGGTAAAAGGCTAGGACTTGGTAACAGACTAGGCGCTTGGACTAGGTAACAGGTACGGAGCTAGGTAACAGGCTAGGAGCTAGGACTAGGTAACATGCTAGGAACTAAGACTAGGTAACAGACTAGAAGCTAGGACTAGGTAACAGGCTAGGACTAGGTAACAGGCTAGGAGCTAAGACTAGTTAACAGGCTAGGAGCAAGGTAACAGGATAGGAGCTAGCTAACAGACTAGGAGCTAGCACTAGGAAACAGGCTAGGTGCTAGGACTAGGTAACAGGCCAGGACTAGGTAACAGGCTAGGACTCGATAACAGGCATAGGCTAAGTCTAGGTAACAGGCTAGGACTAGGTAACAGGCTGGGAGCTAGGACTATGTAACAGGCAAGGAGCTGGGACTATGTAACAGGTTAGGTGCAAGAGTGATTGACTGGCTGTGCTGGCCAGTTCACGTTACTCAACTTTAGAGTCACACGTTGTCGACGTGGCAGCATCTACATTGGAAGGATCTCAAAGTGAAACGTTATCCACGTGGTCCAGTCTATATTGGAAGCATCTGGTCTCCTCCCTTATCTATCTAGTATCCAGCTGTCCATGATCAACCATTGACGAAGACACTTTTATGTACCAGAATTATGTTGTGTTGAAACATAGCTGGATAACATTCCAAGAAAAGAAGCTTATAGTTTTCATAGAATTTATGTGCGGGATTGAAGCGGCAAGATGTTTTCATTGTAAGGCCGAGTCTCTTAGTGCATAGTTTGGTGTGCAGACAGTCAGGTATTTTTCAGTCTTGCTCTTACATTCCCCCTCCCTTTAAAAAAATAGTTTTGAGTTTCACTACAGATGCACCTGTATGTGTTTTTCATTAAAAACGTAAACTTATCCACGAAAGATCATAAGTGGGAAGACCAGGCGGTTAGCCATGGTGTTTAGCCACATGGTGAAGTTTCCTCCCATAGCTCCTAACCTGTTGCCACGTCTACGAGGTAAGATATCTCATTTCAATGGTACTGAATTGTTTCCCACTTGGTTTCTAAAACCTTTTCAGAAATCTGTGTTGTTTACCTTGTTGTATTTCATTGTACATGTGAATACGTGAATGTACCTCTCACCTAAAAATGTCATACAATGGTTCCAGCGACGGGCGAAGCTGCATATACAGTAGGAATGAAGTACGTGTTTTATCATGTGTTTTATTGTGGTTATTTACAGTTCTCAGGTGTTGACTGGATTTCAATGCATATCATGTATTATGTCATTATTTTTAAGTTTTGTATTTGTGTTACGTGTTCAGTTGTATTATTTTAAACACACTGTATCGATATTCTCAGTCATTTGATAGGATATCTATCTACAAGAATAACTATGTTTGACATTCTATGGAATGCTTTGGAACATTCCGaacaacacaaaaaaaaagtGTGGTGTAAGCAAGTGTTTTGTAAATATTGTGCAATTCTGTTTTTGGATTCAGTTTAAAGGATGTTCTAGTAAAGACGGAAGCAAATGAAACCCTTTGCGTTTTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859337 lncRNA upstream 42300 85489250 ~ 85489859 (+) False G756506
TU859338 lncRNA upstream 42300 85489250 ~ 85489859 (+) True G756506
TU859336 lncRNA upstream 43293 85483597 ~ 85488866 (+) True G756505
TU859217 lncRNA upstream 117543 85413435 ~ 85414616 (+) True G756404
TU859277 lncRNA upstream 171952 85359904 ~ 85360207 (+) True G756454
TU860193 lncRNA downstream 4813 85642867 ~ 85643079 (+) True G757220
TU860199 lncRNA downstream 9554 85647608 ~ 85647840 (+) True G757226
TU860230 lncRNA downstream 14123 85652177 ~ 85652554 (+) True G757232
TU860233 lncRNA downstream 25050 85663104 ~ 85664140 (+) True G757235
TU860241 lncRNA downstream 44290 85682344 ~ 85682589 (+) True G757243
XM_021614116.2 mRNA upstream 6920 85511382 ~ 85525239 (+) False klhl40a
XR_005052987.1 mRNA upstream 6920 85511382 ~ 85525239 (+) True klhl40a
XM_036986614.1 mRNA upstream 26267 85474107 ~ 85505892 (+) False hhatla
XM_021614113.2 mRNA downstream 20546 85658600 ~ 85663057 (+) True LOC110530829
XM_021614110.2 mRNA downstream 52466 85690520 ~ 85708770 (+) True LOC110530827
XM_036986893.1 mRNA downstream 71600 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 100951 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 154946 85793000 ~ 85881217 (+) True LOC110531032
TU859221 other upstream 268066 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 594415 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 595012 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 654080 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 970268 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 313914 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 479609 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 592297 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 893099 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 996730 86634784 ~ 86635460 (+) True G758045

Expression Profile