RNA id: TU859349



Basic Information


Item Value
RNA id TU859349
length 365
lncRNA type sense_over
GC content 0.53
exon number 2
gene id vipr1a
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85532159 ~ 85638054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caggGGTTTGGGGTTGCAGTCCTGTATTGTTTCCTAAATGGAGAGGTGCAGGGGGAGGTGAAGCGTAAGTGGCGGCGATGGCACATGCAAAGGTTTCTGGGTAAAGGAGACACCAAATACCAGCAGCCCCAGTATCTGGGTAGCAACGGTAATAACTTCAGCACTCAGATCACCATGCTGACCAGGTGTAGCCCCACCACACGTCGAGCTTCCGACTGCCAGGAACACTTCTCTGCTATCTGAGCCCAGCTCTGGGTGGTAACAGAGggcagagaagaggaggaaacagaGATGAGCTGCACTGAAGCGCTGTTTAGTATTCAGTCAGCACAGTAGAGACCACCAGCCAACCACACACAACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU859371 lncRNA upstream 25259 85553424 ~ 85607980 (+) True G756532
TU859376 lncRNA upstream 71913 85560343 ~ 85561326 (+) True G756536
TU859358 lncRNA upstream 97154 85535429 ~ 85536085 (+) True G756520
TU859337 lncRNA upstream 143380 85489250 ~ 85489859 (+) False G756506
TU859338 lncRNA upstream 143380 85489250 ~ 85489859 (+) True G756506
TU860175 lncRNA downstream 606 85634533 ~ 85637305 (+) False vipr1a
TU860173 lncRNA downstream 1637 85635564 ~ 85637305 (+) False vipr1a
TU860181 lncRNA downstream 1637 85635564 ~ 85638039 (+) True vipr1a
TU860193 lncRNA downstream 8940 85642867 ~ 85643079 (+) True G757220
TU860199 lncRNA downstream 13681 85647608 ~ 85647840 (+) True G757226
LOC110530830 mRNA upstream 14912 85617604 ~ 85618327 (+) True LOC110530830
XM_021614116.2 mRNA upstream 108000 85511382 ~ 85525239 (+) False klhl40a
XR_005052987.1 mRNA upstream 108000 85511382 ~ 85525239 (+) True klhl40a
XM_036986614.1 mRNA upstream 127347 85474107 ~ 85505892 (+) False hhatla
XM_021614113.2 mRNA downstream 24673 85658600 ~ 85663057 (+) True LOC110530829
XM_021614110.2 mRNA downstream 56593 85690520 ~ 85708770 (+) True LOC110530827
XM_036986893.1 mRNA downstream 75727 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 105078 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 159073 85793000 ~ 85881217 (+) True LOC110531032
TU859221 other upstream 369146 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 695495 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 696092 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 755160 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1071348 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 318041 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 483736 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 596424 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 897226 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 1000857 86634784 ~ 86635460 (+) True G758045

Expression Profile