RNA id: TU860175


Basic Information

Item Value
RNA id TU860175
length 2138
lncRNA type sense_over
GC content 0.46
exon number 2
gene id vipr1a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85532159 ~ 85638054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTACACTATGTGTTAAATCCAAAAAACCTTCCAGTTTGAATCACCATTggatatatctgtgtgtgtattgagTGTTGTGTTAGTCCGTGTGGCAGGGTTGAAGTCAATTCCATTTTAATTCTAGTCAAATTCAGAAAGTAAAACCAAATTCCAAATTTTAATCATGGAAAACCATTcaagagaattggaatttcagtgtacttcctgaattagaaatggaattgaccccaactctgCTGTGTGACTTGAGATAATCGTAACTTTACATTGGTCTCATGAGCTAGCTACAgaagcctgatcccagatctgtaacatactgtatgtgctttAGCCAGCTTCTTTGTCATacatgtttgacatgacaacaaatGAACATGAACAGAGAAGTTGGCTAACAGAAGAGCAACCGGTTAGGAGCTACGGCTAGGTATTAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTATGAGCTAGGACTGGGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGAGTAACAGGCTAGGAGCTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGCCAGGAGCTAAGACTAGGTAACAGGTTAGGAGCTAAGACTAGGTAACAGACTAGGAGCTAGAACTAGGTAACAGACTAGGAACTAGGAGTAGGTAACAGACTAGGAGCTAGGACTAGGTAACAGGCTAGGAGCTAGGACTATGTAACAGGCTAGGAGCTAGATAACAGGCTAGGTGATAGGACTAGGTAACAGGCTAGGAGCTAGTACTCGGTAACATGTAGGAGCTAGGCAACCGGCTAGGAGCTAGGTAACAGGCTAGGAGCTAGGACTGGGTAACAGGTATGGAGATAGGTAACAGGCTAGGAGCTAGGACTAGGTAACATGCTAGGAACTAAGACTAGGTAACAGACTAGAAGTTAAGACTAGTTAACAGGCTAGGAGCAAGGTAACAGGATAGGAGCTAGCTAACAGACTAGGAGCTAGCACTAGGAAACAGGCTAGGAGCTAGGACTAGGTAAGAGACTAGGAGCTAGGTAACAGTCTACGACCTAGAATTAGGTAACATGGTAGGACTAGGTAAAAGGCTAGGACTAGGTAACAGACTAGGAGCTAGGTAACAGTCTACGACCTAGAATTAGGTAACATGGTAGGACTAGGTAAAAGGCTAGGACTTGGTAACAGACTAGGCGCTTGGACTAGGTAACAGGTACGGAGCTAGGTAACAGGCTAGGAGCTAGGACTAGGTAACATGCTAGGAACTAAGACTAGGTAACAGACTAGAAGCTAGGACTAGGTAACAGGCTAGGACTAGGTAACAGGCTAGGAGCTAAGACTAGTTAACAGGCTAGGAGCAAGGTAACAGGATAGGAGCTAGCTAACAGACTAGGAGCTAGCACTAGGAAACAGGCTAGGTGCTAGGACTAGGTAACAGGCCAGGACTAGGTAACAGGCTAGGACTCGATAACAGGCATAGGCTAAGTCTAGGTAACAGGCTAGGACTAGGTAACAGGCTGGGAGCTAGGACTATGTAACAGGCAAGGAGCTGGGACTATGTAACAGGTTAGGTGCAAGAGTGATTGACTGGCTGTGCTGGCCAGTTCACGTTACTCAACTTTAGAGTCACACGTTGTCGACGTGGCAGCATCTACATTGGAAGGATCTCAAAGTGAAACGTTATCCACGTGGTCCAGTCTATATTGGAAGCATCTGGTCTCCTCCCTTATCTATCTAGTATCCAGCTGTCCATGATCAACCATTGACGAAGACACTTTTATGTACCAGAATTATGTTGTGTTGAAACATAGCTGGATAACATTCCAAGAAAAGAAGCTTATAGTTTTCATAGAATTTATGTGCGGGATTGAAGCGGCAAGATGTTTTCATTGTAAGGCCGAGTCTCTTAGTGCATAGTTTGGTGTGCAGACAGTCAGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859349 lncRNA upstream 606 85633239 ~ 85633927 (+) False vipr1a
TU859371 lncRNA upstream 26553 85553424 ~ 85607980 (+) True G756532
TU859376 lncRNA upstream 73207 85560343 ~ 85561326 (+) True G756536
TU859358 lncRNA upstream 98448 85535429 ~ 85536085 (+) True G756520
TU859337 lncRNA upstream 144674 85489250 ~ 85489859 (+) False G756506
TU860193 lncRNA downstream 5562 85642867 ~ 85643079 (+) True G757220
TU860199 lncRNA downstream 10303 85647608 ~ 85647840 (+) True G757226
TU860230 lncRNA downstream 14872 85652177 ~ 85652554 (+) True G757232
TU860233 lncRNA downstream 25799 85663104 ~ 85664140 (+) True G757235
TU860241 lncRNA downstream 45039 85682344 ~ 85682589 (+) True G757243
LOC110530830 mRNA upstream 16206 85617604 ~ 85618327 (+) True LOC110530830
XM_021614116.2 mRNA upstream 109294 85511382 ~ 85525239 (+) False klhl40a
XR_005052987.1 mRNA upstream 109294 85511382 ~ 85525239 (+) True klhl40a
XM_036986611.1 mRNA upstream 128641 85474120 ~ 85505892 (+) False hhatla
XM_021614113.2 mRNA downstream 21295 85658600 ~ 85663057 (+) True LOC110530829
XM_021614110.2 mRNA downstream 53215 85690520 ~ 85708770 (+) True LOC110530827
XM_036986893.1 mRNA downstream 72349 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 101700 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 155695 85793000 ~ 85881217 (+) True LOC110531032
TU859221 other upstream 370440 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 696789 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 697386 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 756454 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1072642 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 314663 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 480358 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 593046 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 893848 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 997479 86634784 ~ 86635460 (+) True G758045

Expression Profile