RNA id: LOC110530830


Basic Information

Item Value
RNA id LOC110530830
length 724
RNA type mRNA
GC content 0.54
exon number 1
gene id LOC110530830
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85617604 ~ 85618327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGCATCCGTTACTCTACTGAAATCTGGTGTCCCAAAAGGGTGAGAACTGCCTTGTAGACATGGACACCAAGGCAGAGGATCTCTTCAGCGCTGAGCCAGCCGACGCTGCTGGATCCGGAGGTGTCAAGGGAAGGCTGTGGCTGCCCAAAGGCCTCTGGCCCGGTGTGGCCAAGTAGTGGTTTGATTGTTTCCGTGCGTCCATCCGTCTCTGGGCTGGCTTCGTGGATCACAGGAAGTTCACCAAGCCCCGCAACTTTGGTGAACTGTGCCAGAGGGTGGTGCACAACTTTGACACCTACAACAGCAACTACACCTTCATCTTCCTCGGCCTCATCCTCTACTGCATTATCAGCTCTCCCATGCCGCTGATTGCTTTGGCAGTGTTTGTTGGTGCCTTCTACATCATCCACCTCAAGTCCCTGGTGTCTAAACTGGTCGTCTTTGGAAAAGAGGTGACCGGACCTCACCAATTGGGTCTGGCTGGggctgtctctttccctgtgttCTGGTTGGCTGGTGCAGGAGCTGCAGTGTTTATGGTCCTGGGCGCGACGATGTTTGTGATTGGCTCTCACGCTGCCTTCCGAGAGCTGGAGGGAGGATCGGAAATGGAGGAGCTCTTCATGGAGCCTGTGTGAAGGCATGGTGATAGAAGAATCTGTATATCTGTGTCATTatagcgtctgtgacagcattggcagcgccattgaggctacaACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859371 lncRNA upstream 9624 85553424 ~ 85607980 (+) True G756532
TU859376 lncRNA upstream 56278 85560343 ~ 85561326 (+) True G756536
TU859358 lncRNA upstream 81519 85535429 ~ 85536085 (+) True G756520
TU859337 lncRNA upstream 127745 85489250 ~ 85489859 (+) False G756506
TU859338 lncRNA upstream 127745 85489250 ~ 85489859 (+) True G756506
TU859349 lncRNA downstream 14912 85633239 ~ 85633927 (+) False vipr1a
TU860175 lncRNA downstream 16206 85634533 ~ 85637305 (+) False vipr1a
TU860173 lncRNA downstream 17237 85635564 ~ 85637305 (+) False vipr1a
TU860181 lncRNA downstream 17237 85635564 ~ 85638039 (+) True vipr1a
TU860193 lncRNA downstream 24540 85642867 ~ 85643079 (+) True G757220
XM_021614116.2 mRNA upstream 92365 85511382 ~ 85525239 (+) False klhl40a
XR_005052987.1 mRNA upstream 92365 85511382 ~ 85525239 (+) True klhl40a
XM_036986614.1 mRNA upstream 111712 85474107 ~ 85505892 (+) False hhatla
XM_021614113.2 mRNA downstream 40273 85658600 ~ 85663057 (+) True LOC110530829
XM_021614110.2 mRNA downstream 72193 85690520 ~ 85708770 (+) True LOC110530827
XM_036986893.1 mRNA downstream 91327 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 120678 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 174673 85793000 ~ 85881217 (+) True LOC110531032
TU859221 other upstream 353511 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 679860 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 680457 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 739525 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1055713 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 333641 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 499336 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 612024 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 912826 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 1016457 86634784 ~ 86635460 (+) True G758045

Expression Profile