RNA id: TCONS_00036798


Basic Information

Item Value
RNA id TCONS_00036798
length 937
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_017930
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 10077157 ~ 10078215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAGAGAGAAGCCAATTATGGAAGGATGCAAGGACATTCATCATTCAGTTAGACACCTGTCCGGCCCTCACAAAGGAGAGAGCCTCCATCCCTGCGCACAGAAGATGCTCATTAGATTGGACTGGAGGAAATAAAGGAAACCGGTGGTTCATTGTCAGAGCGCGGCGCGGTAAGACAAATGGAGGGCTGCTCTGAAACACTGACGGCTGGCAATCCACGGATGTGAGAATGTATAAACGCTCTTCACATTTGCTCTGCACCAGGTGGGCATTTCTCGCTCGCTTTCATTCATCTGTATCTTCTCTCTTTCTGAACATCCTAAGAGCTCAGACTCCGTGCTTTTTATCGGGGGAGATGTTTGGATAGGGATTCTCTGTAGATCTTGCCGTCAGCAAGCCCTTCAGTTGTTTGTGGAATTCACACTTAACGTCAAATGCCTCAGCACAGAGTGATGATACAGTTTGAGCTGAATCCCCAGCAAAGAGCTGAGACTGAATGAAGGATGGAGGCAGCAGAACTGCAGGTTGTTTGACATCCCAACTCCTCAGgGGGACAAGTAAAGCAGTATACTACAttactattataaaaaaaaaaaaaaagttgtctgaCAAACCACTGTCATGTGGTGCAACTAACAtccaaaaacattcatttattttatgatgGCAATGGAAAatagttctttctttctttacgtAAAGTAAGTTTTTTAGGATTATAGAAATGCTATAAACATATTGATATAGAACCATTGTCTTATTCAAAGAGTGACTAACCTGACAGTTTTACATCTGCATTAATCAGTTTGTCATATAGTACCTTTAataacttctccagcatatgttttacgcagcattcacacacacaaactacggccaacttagcttattaaattcacctttagcgcatgtctttggactgtgggggaaactgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035348 lncRNA downstream 1242063 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 1755843 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 2123975 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036796 lncRNA downstream 2438505 7612155 ~ 7638652 (-) False XLOC_017907
TCONS_00036795 lncRNA downstream 2865961 7191883 ~ 7211196 (-) True XLOC_017904
TCONS_00035378 lncRNA upstream 35813 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00035381 lncRNA upstream 269568 10347783 ~ 10399176 (-) False XLOC_017933
TCONS_00035380 lncRNA upstream 269568 10347783 ~ 10422813 (-) True XLOC_017933
TCONS_00036799 lncRNA upstream 901243 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00036800 lncRNA upstream 932982 11011197 ~ 11012011 (-) False XLOC_017936
TCONS_00035375 mRNA downstream 12027 10057750 ~ 10065130 (-) True XLOC_017929
TCONS_00035373 mRNA downstream 96839 9970786 ~ 9980318 (-) True XLOC_017927
TCONS_00035372 mRNA downstream 113444 9958506 ~ 9963713 (-) True XLOC_017926
TCONS_00035369 mRNA downstream 296240 9776390 ~ 9780917 (-) False XLOC_017924
TCONS_00035366 mRNA downstream 316733 9752382 ~ 9760424 (-) False XLOC_017923
TCONS_00035376 mRNA upstream 20375 10098590 ~ 10118818 (-) False XLOC_017931
TCONS_00035377 mRNA upstream 20894 10099109 ~ 10120442 (-) False XLOC_017931
TCONS_00035379 mRNA upstream 208846 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035382 mRNA upstream 405800 10484015 ~ 10487951 (-) True XLOC_017934
TCONS_00035383 mRNA upstream 1020024 11098239 ~ 11178022 (-) True XLOC_017937
TCONS_00035374 other downstream 23456 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035371 other downstream 170773 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 296290 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 316733 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035364 other downstream 426095 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035387 other upstream 2527503 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035389 other upstream 2942274 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035393 other upstream 3125851 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 3291012 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035409 other upstream 3740180 13818395 ~ 13818510 (-) True XLOC_017960

Expression Profile

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