RNA id: XM_021614113.2


Basic Information

Item Value
RNA id XM_021614113.2
length 1725
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110530829
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85658600 ~ 85663057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAACATATCATTGTCTCAGCAAGTGCAACGTCAGCAACGCGTAGACTAAAGGAAGTGAAACCTACATGACTCGCCTTGACtttagttttggaattgtttcAGGTTATTCGTTCCCAGTTTGACTGTATGTTTTCGAATAGATTGACAGGATGAGTGACCTTCCCATCTTCAACCCATTGGTCCTGATCGGCGTGGGCTCCAGCTTTGCCTTCTCTGGCTTGTTTTACCACTTATACAAAGAGAAGAAAGATGAAATGGTCAAGctgaagGAAATACCCAAATTCATCCCGGATCAACACTTAGTAAGGATCCTCAAGGCATCGCCCCACAGAAAACTGCAGTACGTCGCAGTAGAAGGTTTGGTCCAGGCGGACGGTGAGACTCTGACCAGTCAGTTTGTCCCAAGATGCTTTGGGGTGATCCAGAAAATAGCTGTAGAGGAACACTGGAAAGTGTGGAACAACATCACTAGAACATGGAACTCCAGAACGACCAACAGGAAGGAGACTAACAACGCCGTCCCCTTCAGTCTGGTTGAACCGGGCGCCTACATCACCGACATCACCGTCAAGGTCCATTCCCCTCTGGAGGCTTCCGGCTGGTTCCTGGAGAGAGTTCACTGCAGTGTCAAACACGCCCAGGAGGGCCTGGTGGACGTGTTGTTGGAGGGCCTCAGCGGCGAGCGGCCCATGGCGCAGAAGGAGACGGAGGAGCTGCTCCGTGTTGGAACCACTATGACAGGCTTCGGGGAGGTGGTgctggagggagggacagggacgACCATGAGGCTGCAGGCGCCACAAGATGGCCGCCGCTACATCCTGGTCCCCACTGACTACAAGGGGTTTATAGAGAGACATGAGGGTACGGCCAATCTGTGGATGAGGCTGACGGCTCTGTTTGGGATTACGGGAGCATCGCTGCTGGCCGGGGCGGTTTATAGTACGATGGGGAAAAAGGACAGAAGGGATTAGTAGTGATGATGCCCAAATCGACTACCTTCTACCGAGCCCTCCTGCACATCTAAAATTATTGGATAGGTTTTAAGCATTATGTTGAAAATTCAACCCAGCCTATCAGAAGGTGAAGTATAGCTTAAACTTATCCTATTTCTTTGTAGatacaaatatattttgttaATGACGGATTATGTCCTAGGTGAATGGTAAATGTCTGTGGTGAATATTATTAAACCACTCAATTTATAGGATTATGGAGGACCCACAGGTATTGCAAGACCGTGTCTTGACAAATCCCGTCCACAGGGTATCAGTGGCACATAAGAAACAGTGTTTAAGTCGATGAATTAACAACGGAGTACTTATACTGGAACGTAAACCCAGCCATTttcttttcttaaaaaaaaaaaaccccgaTATGTTCTGAATCGATCATTTTCCAAATATCTAGTTTTAATCATACTTGTTTTAAAATCATTCCTTGCCGGTCGCTGCGGTTTAGTTGAAGTAATGTCTTTGAGATGGTGTTGTATTATGTGATAGACGTATGTGTGACTGACATCAGCAGGTGACTTTGCTAGTATAGAACACAACTAGCTCTATACAGCATTAAACCACTGTGGTTACCAGGGAAATCAGTTTTTAAATAGTTCTGAACTGACAATGAGACAGGAAAAACCTGTCTCATACTGAACACTAAAGCAGATCTGTGACATTCTCTATTCATTGGGTGATGGTCTATGTTGGGAGTAtattaaaaacta

Function

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860230 lncRNA upstream 6046 85652177 ~ 85652554 (+) True G757232
TU860199 lncRNA upstream 10760 85647608 ~ 85647840 (+) True G757226
TU860193 lncRNA upstream 15521 85642867 ~ 85643079 (+) True G757220
TU860181 lncRNA upstream 20561 85635564 ~ 85638039 (+) True vipr1a
TU860175 lncRNA upstream 21295 85634533 ~ 85637305 (+) False vipr1a
TU860233 lncRNA downstream 47 85663104 ~ 85664140 (+) True G757235
TU860241 lncRNA downstream 19287 85682344 ~ 85682589 (+) True G757243
TU860369 lncRNA downstream 136839 85799896 ~ 85800353 (+) True G757354
TU860373 lncRNA downstream 141426 85804483 ~ 85805327 (+) True G757358
TU860394 lncRNA downstream 200122 85863179 ~ 85863889 (+) True G757378
XR_005052988.1 mRNA upstream 20546 85532159 ~ 85638054 (+) False vipr1a
XR_005052989.1 mRNA upstream 20546 85532159 ~ 85638054 (+) False vipr1a
XR_005052990.1 mRNA upstream 20546 85532159 ~ 85638054 (+) False vipr1a
XM_036986615.1 mRNA upstream 22895 85532159 ~ 85635705 (+) False vipr1a
LOC110530830 mRNA upstream 40273 85617604 ~ 85618327 (+) True LOC110530830
XM_021614110.2 mRNA downstream 27463 85690520 ~ 85708770 (+) True LOC110530827
XM_036986893.1 mRNA downstream 46597 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 75948 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 129943 85793000 ~ 85881217 (+) True LOC110531032
XM_036986621.1 mRNA downstream 689217 86352274 ~ 86555806 (+) True LOC110530844
TU859221 other upstream 394507 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 720856 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 721453 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 780521 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1096709 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 288911 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 454606 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 567294 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 868096 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 971727 86634784 ~ 86635460 (+) True G758045

Expression Profile