RNA id: XM_021614110.2


Basic Information

Item Value
RNA id XM_021614110.2
length 6066
RNA type mRNA
GC content 0.53
exon number 41
gene id LOC110530827
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85690520 ~ 85708770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTGGCACTTTCAACCAGATATAAGGAGGCTGAGGCCCCAGCATTCATAAGTCAGATACCTTCTTCCTCTGTGGCTCAACCAAGGGGGACAAATTCATCTGTAGGAGGGGATAACGAAGTAATCCGTCACCATGAGTACGGACGCGGAGATGCAAATCTACGGCAAGGCTGCCTTGTACCTTCGTAAgcctgagagggagaggatggaggcacAAGCAGCACCTTTTGATTCAAAGAACGCCTGCTATGTGACAGACAAGGTGGAGCTGTACCTAAAGGGTTTGGTCACTGCCAGGGCCGATGGCAAGTGTACTGTGACAGTCACCAAACCTGACGGCAGTAAGGAGGAAGGAAAAGAGTTCAAAGAAGCAGACATCTATCAGATGAACCCCCCTAAGTACGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTCCCCGTGTACGACGAAGAGGTTGTCAACGCCtacagagggaagaagaggatggAGGCTCCACCCCATATCTTCTCCGTCTCTGACAACGCCTTTCAGTTCATGATGATTGataaggAGAACCAGTCCATCCTGATTACCGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTCGCCACCATTGCGGTATCTGGTTCCAAGAAGGAAGTAGACCCCAGCAAAATGCAGGGGTCTCTTGAGGATCAGATCATTGCAGCTAACCCTCTGCTGGAGTCTTACGGTAATGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGCAGGCAAACTGGCTAAAGCTGACATTGAGACCTacctgctGGAGAAGTCCAGAGTGGCCTTCCAGCTGCCCGATGAGAGAGGCTACCACATCTTCTACCAGTTAATGACAGGCCACAAACCTGAACTAGTTGAAATGACGCTCCTCACCACAAACCCCTACGACTTCCCCATGATCAGCCAGGGTCATATCGCTGTGCCCAGCATCAACGACAAGGAAGAGCTGGATGCCACAGACGATGCCATTACGATCCTGGGCTTCACAAATGATGAGAAGATGGCCATCTACAAGCTGACAGGAGCTGTAACGCACCATGGCAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATCGGCTACCTGCTGGGCCTGAACTCAGCGGAGTTGCTGAAATGTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACCAAGGGACAGACTGTGGCTCAGGTTTATAATGCAGTCATGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTACATCGGTGTGCTCGACATTGCCGGGTTTGAGATCTTTGATTACAACAGTATGGAGCAACTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGAATTGTCTGGGAATTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTTCAGACACTACCTTCAAGAACAAGTTGAACGACCAGCATCTTGGCAAAACCAAGGCGTTTGAGAAGCCCAAGCCTGCCAAAGGCAAGCCAGAGGCCCACTTCTCTCTGGTACACTACGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGATAAGAACAAGGACCCCCTGAACGAATCAGTTATTCTGATGTACGGGAAGGCCTCAGTCAAACTGTTGGCTACCCTGTACCCTGCTGCCCCACCTGAGGATAAAGCCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCGTCCCAGTTCAGGGAGAACTTACACAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTTCTGGAGGGGATCAGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAGCAGAGGTATAAAGTACTGAATGCCAGTGTCATCCCAGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGGTCCATTGATGTAAATCACGAGGATtataagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTAGCAGCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCTCcaagatgatggagaggagAGAGTCCATCTTCTCCATCCAGTACAACATCCGCTCATTCATGAATGTGAAAACCTGGCCATGGATGAAGTTGTACTTTAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGAAGACAGACCTGGCCAAGGCTCTGGCCACCAAGAAGCATTTGGAGGAGAAGTTAGTGGCCCTGGTGCAGGAGAgggcagacctggctctccaAGTCGCATCTGAAGGTGAGAGTCTGAACGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACTGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGACGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCCTAGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAAGAGATGGCGTCTTTGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGAGCCAAAAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAAGCCGATGAGAAAATCAAGAAAAAGGAGTTTGAGACCAGCCAGCTCCTCAGCAAGGTTGAGGATGAACAGTCTCTGGGAGCTCAGTTGCAGAAGAAGATCAAGGAACTCcaggcCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAGGAGGCTGGAGGCGCCACTGCTGCTCAGATTGATATGAACAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACTTTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAACGCGTCAAGCAGAAGCTAGAGAAGGAGAAGAGCGAGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGTGAGCTCAAGACTAAGAATGATGAGAATGTTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGACgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGAAAACAGGCCTTCACCCagcaggtggaggagctgaagaggCAGATTGAGGAGGAGGTCAAGGCTAAAAACGCCCTGGCCCACGGTGTCCAGTCTGCCCGCCATGACTGTGACCTCCTGAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAGCGTGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAGCGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGACGCTGAGGAGACCATTGAGGCGACCAACTCCAAGTGCTCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCCATGGCCGCCAACCTAGACAAGAAGCAGCGTAACTTTGACAAGgtcctggcagagtggAAGCAGAAGTATGAGGAGGGTCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGCTCGCTCTATGAGCACTGAACTCTTCAAGTTGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACagGAGATCTCTGACCTGACTGAGCAGATCGGAGAGACGAGCAAGAGCATCCATGAGTTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACCGCTCTGGAGGAGGCTGAGGCAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAAATCAAGGGTGAGGTGGACAGGAAGCTGGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGATGATTGACTCCATGCAGAGCACCCTGGACTCTGAGGTCAGGAGCAGGAATGACGCCCTGAGggtgaagaagaagatggagggagacctGAACGAGATGGAGGTCCAGCTGAGCCACTCCAACAGGCAGGCCGCTGAGGCCCAGAAACAGCTGAGGAACGTCCAGGGACTGCTCAAGGATGCCCAATTGCACCTTGATGACGCTGTCCGTGCCTCAGAGGACATGAAGGAGCAGGTAGCCATGGTGGAGCGCAGGAACGGTCTGATGGTGGCTGAAATTGAGGAGCTGAGAGTTGctctggagcagactgagagagGCCGCAAAGTGGCTGAGACTGAGCTGGTAGATGCCAGCGAGCGCGTTGGACTCCTGCACTCCCAGAACACCAGCCTTCTGAACACCAAGAAGAAGCTGGAGACTGACCTGGTGCAGGTGCAGGGAGAGGTGGACGACATCGTCCAGGAGGCCAGGAACGCAGAGGAGAAGGCCAAGAAGGCAATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggacaccagctctcacctggagaggatgaagaagaacctGGAGATCACAGTCAAGGACCTGCAGCACCGACTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTTCGTGAGCTCGAGACTGAGGTGGAGGCTGAGCAGAGAAGAGGTGCAGACGCAGTCAAGGGAGTCCGCAAGTATGAGCGCAGAGTCAAGGAGCTCACTTACCAGACTGAGGAGGACAAGAAGAACGTTGGCAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTGAAGGCCTACAAGAGACAGGCTGAGGAAGCGGAGGAACAAGCCAACGGCCACATGTCTAAGTTCCGGAAGGTTCAGCATGAACTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGACTCAAGTCAACAAGCTCAGAGCCAAATCTCGCAGCACTGGAAAGGGCAAAGAAGTTGCTGAATAAACAAGAGAAGAAGTTGCTGAATAAACAAGACCGAAGTCTTATATCATTTTCCTGTGTTGcataaaatatgattttcatggTGAAAATGATTGTTGATTaaaaacatgtaggcctacata

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860241 lncRNA upstream 7931 85682344 ~ 85682589 (+) True G757243
TU860233 lncRNA upstream 26380 85663104 ~ 85664140 (+) True G757235
TU860230 lncRNA upstream 37966 85652177 ~ 85652554 (+) True G757232
TU860199 lncRNA upstream 42680 85647608 ~ 85647840 (+) True G757226
TU860193 lncRNA upstream 47441 85642867 ~ 85643079 (+) True G757220
TU860369 lncRNA downstream 91126 85799896 ~ 85800353 (+) True G757354
TU860373 lncRNA downstream 95713 85804483 ~ 85805327 (+) True G757358
TU860394 lncRNA downstream 154409 85863179 ~ 85863889 (+) True G757378
TU860360 lncRNA downstream 172929 85881699 ~ 85882385 (+) True G757346
TU860359 lncRNA downstream 173781 85882551 ~ 85883276 (+) True G757345
XM_021614113.2 mRNA upstream 27463 85658600 ~ 85663057 (+) True LOC110530829
XR_005052988.1 mRNA upstream 52466 85532159 ~ 85638054 (+) False vipr1a
XR_005052989.1 mRNA upstream 52466 85532159 ~ 85638054 (+) False vipr1a
XR_005052990.1 mRNA upstream 52466 85532159 ~ 85638054 (+) False vipr1a
XM_036986615.1 mRNA upstream 54815 85532159 ~ 85635705 (+) False vipr1a
XM_036986893.1 mRNA downstream 884 85709654 ~ 85713206 (+) True LOC118965641
XM_021614109.2 mRNA downstream 30235 85739005 ~ 85760958 (+) True LOC110530826
XM_036986618.1 mRNA downstream 84230 85793000 ~ 85881217 (+) True LOC110531032
XM_036986621.1 mRNA downstream 643504 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 860930 86569700 ~ 86583738 (+) True LOC110504868
TU859221 other upstream 426427 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 752776 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 753373 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 812441 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1128629 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 243198 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 408893 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 521581 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 822383 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 926014 86634784 ~ 86635460 (+) True G758045

Expression Profile