RNA id: XM_036986618.1


Basic Information

Item Value
RNA id XM_036986618.1
length 2989
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110531032
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85793000 ~ 85881217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGCGCACCTCGCGATTCTGCTGGAGTGGAGCAGAAAGTAGCGTCACTTTCTTCATCGTCACAAGGAACAGAACCAGAGTGACAGTTTTCAAACGTCTAGTTCTTCGTTTACAATGTCGATTCAAACACTTATTGAATAGACTTAACTATTTTTAGTTATTCTTCTACTTTGTTTCGACTCTCGAAAGCGGAGATGAAGTACTGGCGGCAGTGCGCGTTGTGGCTGATAAACTGCAAGGTGCTTCCTCCGACCCATCGGGTAACCGGGGACAGTGCCCAGGTATTTGACTTGGCTCAGACGCTCCGGGACGGGGTGCTGCTCTGTCAGCTGCTCAACAACTTGAAACCCCACACCATCAACCTGAAGGAGATTAACCTTagaccacagatgtctcagTTCCTCTGCTTGAAGAATATCCGGACCTTCCTGACATCCTGCTGTGAGGTGTTTGGGATGAAGAAGACTGATCTGTTCGAGGCCTTTGATCTGTTTGATGTCCGGGACTTTGGAAAGGTGATGGATACTCTGTCCATGCTCTCCTACTCCACGGTCGCACAACAGGCAGGAATCAAGCCCTTTCCAACAGAGGAGAGTCTGAAAGACGAGGATATTTACAGTCATCTGAAGGACCTGATTGATGAGAACGTTctagaggatgaggaagagttGTATGCTCCAGTCTACGGGTTGGATGACACCGatgaaggaggagagatctaTGAAGACCTGATGAGGACCGAACAGCACCCTACACTgAAGCAGGCTGAGAATGTGAGAAGCTGCTGCCTCTCAGAGATCAAACAAACAgaggagagatacacagagaccctGGAGTCTATAGAGAAGTACTTTTTGAATCCACTGAAGAAATTTTTCACTGCGTCAGAAATCGACAAGGTTTTCGTCAACATCCCTGACCTGGTGAAAGTCCATAAGAGTCTGATGCTGGAGGTGCAAGAGTCCATTCTCAACAAGAACGCCTTAAACCTCTACCAGGTCTTCATTGCCTATAAGGACAGGCTACTCATTTATGGAATCTACTGCAGCCACGTTGAGATATCCATCACAGTGTTGGACTTTATTTGTAAGGAGAAAGAGGACGTACGACTAAAGCTAGAGGAATGTTCTAAAAGAGCCAACAATGGGAAGTTCACTCTGAGAGATCTACTGGTGGTTCCCATGCAGAGAGTCCTCAAGTACCATCTCCTACTACAGGAGCTGGTCAAACACACCCCCGACGCAGCCGACAAGAACAACCTGAAGACGGCTCTGGACGCCATGAAGGACTTGGCTCAGTATGTCAACGAGGtgaagagagacaaggagactCTGAAGGAGATCAACCAGTATCAACGCTCCATCGAGAACCTGAACCAGCCCCTGGAGAGCTACGGACGGCCCAAGGGGGACGGAGAGGTCCGAATGGTGTCTAATGTTGACAAGAAGAAACAGGACAGACATATCTTCCTGTTTGACGGGGCTGTGATCGTCTGTAAGAGACGAGGAGACAACTATGAGATGAAGGATGTGATCGATCTCAACTACTTTAAGATCACCAACAACCCCACCCAGGATAGAGAGAGCAAGAAGtgGTTCTATGGTTTCTACCTGACCCATCAGCAGGGGCAGAGCGGCTTTGAGTTCTTCttcaagaccaaggagctgaagAAGAAGTGGCTGGACCAGTTTGACATGGCAATatccaacatcagaccagagaactcCAGTAACAACTTCCACCAGTTCAGGATGCATACCTTCATCAGAATCACTACCTGTAGCTCCTGTCACCTGctcctcagGGGTATCTTCAACCAGGGCTATCTCTGTCTTAAGTGTGGACTCGGAGCTCATAAGGAATGCCTGGGTAGAGTGGGTGTCTGTGGAAGAACTGATTCTGCCAAGCTGAGGCCTGAGagggCTCCGACGGTGCGGAAACAACCAGACCCAGgtCTCCCTAGGATGCTGGTGATCAGAGACTACTGTGGCATCCCCTCTCCCCAGAGTGCCCCCCCGTTGACCATCCATGCTGGGGACATCATCGAGCTCATCTGTGCCGACCTACACAGCTCCTGGTGGCAGGGCAAGATCTTGGCGACGAGTGAGATTGGTTCCTTTCCCAGCGATGCCGTTAGGCCATGCCCATGTGTACCCAAACCAGTGGATTATTCAGCCCAGCTGTGGTTTGCAGGACCAATGGAGAGGCAGGAGGCGGCGGTAAAGctgatggacagagagaacagcacCTACCTGATCAGACACCGGACCAGAGAGTCTAACGAGTATGCCATCAGTATCAAGTTCAACGATGACGTCAAACACATCAAGATCCTGACAAAGAATGAATGCTTTTACATCGCAGAGACCAGGCTGTTTAAGACTGTGTTGGACCTGGTAGACTACTACAAGCAGCATTCTCTGAGAGAGGGCTTCAAGAGTCTGGACACAACACTGCAGGTACCATTCAGGGAGCCAAGCAACGGGAACAGCCTGCCCCAAGGCATCCGACACACTGGCACTGTGTTCTCTCCCAGGGTGGTGGGCATCGCGTTGGCACGCTACGACTTCAGCTCCAGAGACACCAGAGAGCTGTCTCTACAAGAGGGAGACGTGGTCAAGATCTACACCAAGATGGCTAACGGCTGGTGGAAGGGAGAGGTCAACGGCAGGGTGGGCTGGTTCCCTTCTACATATGTGGAAGAGGAAGACTGAGCTGGTTGATTAAACCTCAGCTCTCAGGTGACACGGCTATAGCCCACACTGCACTACGGCTCCAGACATCCTCCAGGTTGTGGAGCCACAGCATCCTGGCACTCTGATAGAACTCAGACAAGACAAAAGCCCCAAGCCAGACAGATGGAAGTAGGAAATGCCCTCTATCCTCATCCATCCTCACCCTACCTCACCCATCCTCAACACACCCATCCTCCTCAACACACCCCACCtcagcccctccctcccatcctcacccctcctcacccttcCT

Function

GO: NA

KEGG:

id description
K05730 VAV; guanine nucleotide exchange factor VAV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860241 lncRNA upstream 110411 85682344 ~ 85682589 (+) True G757243
TU860233 lncRNA upstream 128860 85663104 ~ 85664140 (+) True G757235
TU860230 lncRNA upstream 140446 85652177 ~ 85652554 (+) True G757232
TU860199 lncRNA upstream 145160 85647608 ~ 85647840 (+) True G757226
TU860193 lncRNA upstream 149921 85642867 ~ 85643079 (+) True G757220
TU860360 lncRNA downstream 482 85881699 ~ 85882385 (+) True G757346
TU860359 lncRNA downstream 1334 85882551 ~ 85883276 (+) True G757345
TU860456 lncRNA downstream 13772 85894989 ~ 85895206 (+) True G757439
TU860471 lncRNA downstream 25771 85906988 ~ 85908033 (+) True G757449
TU860473 lncRNA downstream 26951 85908168 ~ 85909182 (+) True G757450
XM_021614109.2 mRNA upstream 32042 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 79794 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 84230 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 129943 85658600 ~ 85663057 (+) True LOC110530829
XR_005052990.1 mRNA upstream 154946 85532159 ~ 85638054 (+) False vipr1a
XM_036986621.1 mRNA downstream 471057 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 688483 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 710293 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 1030960 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 1121962 87003179 ~ 87406445 (+) True LOC110530822
TU859221 other upstream 528907 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 855256 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 855853 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 914921 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1231109 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 70751 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 236446 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 349134 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 649936 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 753567 86634784 ~ 86635460 (+) True G758045

Expression Profile