RNA id: XM_036986621.1


Basic Information

Item Value
RNA id XM_036986621.1
length 8454
RNA type mRNA
GC content 0.57
exon number 64
gene id LOC110530844
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86352274 ~ 86555806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTTCCTAAAAGCCCAAACACCTTCAGTCTAAGGGCtggggctgagggagagaggagcaggagggccCAGTTTGGCTCTAAAGAAAAAACAGTACTGTTTTGCACTTATGGCTTTGTTGTAGTAACTGAAATTACCAACAACAACTCCGTCCTTTTTCTGTATTTGTGGAAGGAAAAGGACCTACATTTTGTACTGAATAGTCGCCCGTTTTTTTTTCTTTAGGAGCTTTGAGTAGCTGAGTGAGTGACAATGGAGATGAAAAGATGGTCCACAAGGTGGAAAACGAAAAGGTGGCTGTGGGACCCCACTCTAATCACCATCGTCACTATCACTTTCCTTCTGCAAGCCGTCAATGTCAAAGCAGcTGACCCAGTGGATGTACTCAAGGCTCTGGACTTCCACAGCTCTCCGGATGGCGTTCGTAAAGTCACGGGCTTCTGCGCTCACCGGAGAGGATCTAAACCTGACATAGCCTTCCGCGTAGGAAAACAGGCGCAGATCAGCGCTCCCAGCATGCAACTCTTTCCAGGAGGAGTGTTCCCAGAGGACTTCTCAGTGATGTTCACCATCAAGCccaaggcaggcagacagtcTTTCCTGCTGTCTGTGTATAATGAGCAGGGGGTCCAGCAGCTGGGTGTGGAGGTGGGACGCTCCCCTGTCTTCCTGTACGAAGACCAACATGGGAAACCTTCCCCAGAGGATTACCCACTGTTCAGATCCATCAACCTCGCTGACGGCAAATGGCATCGCGTGGCAATCAGTGTGGAGAAGAAGAGTGTGACCATCATTGTGGATTGTAAGAAGAAGCTGAGCAGGCCACTGAAGAGGAGCGACGGGGCAGCCATCAACACTGACGGCATCACCGTGTTCGGAACCAGGATTCTGGACGAAGAGGTCTTTGAGGGTGACATCCAGCAGCTGCTGATTGTGGCCGACCCGCGGGCAGCGTACGACTACTGTGAACACTACAGCCCCGACTGTGAAACGCCTCACCAGGAGCAGCCACAGGCACAGGAACCAGAGGatgagTACAATTCATACGACCTGGAGTACAGTGAGGTCTATGACTACAGTGAAGGAGGAGTGGCCACTGAAACTGCCCCAACCGAAGGAGCACCTGCACGTGAGGCAGTTGCTGTGGATGCAGCCGCTGTGGATGGAGAATACACAGCCTACGACTATGGCACGGTGGACAGCGCTCAACCGGCTGAGAACCCTACAGACTCAACCTCTCCAATCCTGAACTATGACGAGGAAATAGTTGATGATTACATCACAGGCGTGGAGAAGGTTGGCGCCGACCCTACGGTTGCCGCAGAAACCGGCTCAGACACCAAAGGTCCCGACCCCGGCGAGAACTCGTATGATTTTAAGGAGTATGATCTGAAGGAATACGGTGACACTAAGGAGATCGATATGAAACAGACGTACGAGTATGGGGATTATGGAGACTATGACACTGGCGAGGCCAAACCCACCGCCTCTGTCTCGGCCTATGAGGATGAGTTTGGGCCCGGCATACCCGCTGAGACCGAGACAGAGTCTAGTatgggaggaggaggatatggtggtgagaagggagagaaaggagaaccCGCCATCATTGAACCTGGGATGCTGATTGAAGGACCCCAAGGAGCCCCCGGCCAAGCTggcCTCCCCGGCTCCCCAGGCTCACAGGGTTCCCCTGGCCCACACGGAGATCATGGTGACAGGGGTCCTCCAGGACGGGCTGGTATTCCTGGTTCGGATGGAGTTCCTGGTCCTCCAGGTACCATCCTGATGCTGCCATTCCGTGCTGGTGGAGAGGCACATAAGGGACCAGTGGTCTCAGCTCAGGAGGCCCAAGCCCAGGCCATCCTTTCCCAAGCCAGGcTCACCATGAGGGGTACCCCTGGGCCAATGGGAATGTCAGGAAGATCTGGGCCTGCGGGTGGACCAGGAGCTAACGGACtgaagggagatggaggagacaacGGACCTCAGggtccCAGAGGTCTGCAGGGTCCAACTGGCCCACCTGGGAAGGCAGGAAAGAGGGGCCGTAATGGAGCTGATGGTTCCAGGGGTATGCCAGGAGAGTCGGGGGGTAAGGGGGACCGAGGATTCGACGGGTTACCAGGTCTCCCCGGAGAGAAGGGACACAGGggtgaGCTGGGTTCCATCGGCTCTCCAGGTGCTCCAGGAGAGGATGGGCAGAGAGGCGAGGACGGTGAGATCGGACAACGTGGTCTGGCAGGAGAAAGCGGACCTAGAGGTCTGCTTGGCCCTAGGGGATCACCAGGGACTGGTGGACAACGTGGTCTCGCTGGACTAGATGGCCAAGCTGGTCCCAAAGGAAACCAGGGCCCACAAGGAGAGTCGGGGCCTGCCGGACAGCAGGGGATCCCTGGATCACAAGGTCTTGTTGGTCCTCAAGGCCCGATCGGACCGCCTGGTGACAAAgGACCGTCAGGTCGTCAGGGATTGGCTGGTCTGGCTGGTGCCGACGGTCCTCCCGGTCACCCAGGGAAGGAGGGTCCTCCGGGAATGAAAGGAGGCGTCGGTCATCCTGGACCTCCGGGTTCTCTTGGCTACCCTGGCCCTCGCGGTGTCAAGGGTGCTGAGGGCGTCAGAGGTCTTAAAGGCGGTGGAGGAGAAAAGGGAGAGGATGGTTTTCCAGGTTTCAAGGGTGACATGGGCATCAAGGGAGACAAGGGAGAGCTCGGTGTCCTAGGAACCAGAGGTGAAGACGGACCTGAGGGACCCAAAGGTCGTTCCGGCCCCAACGGAGAGGCTGGCCCCATCGGGTCGGCTGGAGAGAAGggtAAACTTGGTGTCCCCGGGTTACCTGGTTACCCAGGAAGACAAGGACCCAAGGGCTCCAGTGGCTTCCCTGGATTCCTCGGCTCCAacggagagaaaggaggaaggGGTATCGCTGGTAAATCTGGACCCAGAGGACAACGTGGCCCAACGGGTCCCCGTGGTGGAAGAGGTGCCAGAGGACCAACTGGAAAGCCAGGTGCTAAGGGAACATCAGGCAACGACGGACCTCCCGGTGGACCAGGAGAGAGAGGACCTCAAGGACCCCAGGGGCCAGTCGGCTTCCCAGGTCCTAAGGGCCCAAACGGGCCCCCTGGTAAAGACGGAATGCCTGGTCACCctgggcagagaggagagacaggtttcCAGGGAAAGACTGGCCCACCTGGGCCTGGAGGTGTTGTAGGACCTCAGGGACCAACGGGAGAGACCGGCGGCATCGGAGAGAGAGGACACCCTGGTTCCCCTGGACCCCCCGGAGAGCAAGGTTTACCTGGAGCTGCTGGAAAAGAAGGAGGAAAGgGTGACCCAGGTCCAATGGGTACGTCTGGGAAGGTTGGCCCAGCCGGGCTCCGGGGCTTCGCTGGACAGAGAGGTCTTCCTGGGGCTAATGGTCCAGCTGGTTTGAAGGGAGGCGAAGGACCACAGGGTGCCCAAGGCCCCGTCGGTTCTCCTGGAGAACGAGGTGCTGCCGGTCCTGGAGGTCCCATCGGTCTATCAGGACGCACTGGACCCCAGGGAGGCCCGGGTCCAGCCGGAGAGAAGGGGGGCCCGGGAGAGAAAGGTCCCATGGGACCAGCTGGTCGTGACGGTATCCAAGGTCCAGTTGGTCTTCCTGGCCCTGCAGGTCCCCAGGGGCCCCCTGGAGAGGACGGAGACAAGGGAGAGGTTGGTGAGCCTGGCCAGAAAGGAAGCAAAGCAGACAAGGGAGAACAGGGACCTCCTGGTCCAGGAGGTCTTCAAGGTGTCATCGGAGCTCCTGGTCCTGCTGGTACTGATGGTGAGTCAGGACCCAGGGGTCAGCAGGGTATGTTTGGCCAGAAGGGAGACGAAGGATCCAGAGGATTCCCTGGGCTACCTGGGCCCATTGGACTGCAGGGCCTGCCTGGTACatcaggagagaagggagagaacgGGGACGTCGGCCCAATGGGTCCGCCTGGTCCTCCAGGTCCCAGAGGTCCCCAGGGTTCTAGCGGAGCTGACGGTGCCCAAGGCCCTCCTGGTGGAGTGGGTTCTATGGGAGGTAatggagaaaagggagagagcggTGAAGCCGGCAACCCGGGACCATCTGGAGAGCCCGGTGGTGGAGGCcccagaggagagacaggggagaagggagagtcaGGACCACCTGGAGCTGCTGGACCTGCAGGGGCCCGCGGACCCGGAGGAGACGACGGCCCCAAAGGCAACCCTgGTCCCGTAGGCTTCCCTGGAGACCCTGGTCCCCCTGGAGAGCCTGGAGTTGGTGGATTGGATGGCTTGGCTGGAGACAAGGGAGATGACGGCGAGGCCGGTCAGCCTGGTCCATCTGGTCCTTCTGGAGAAGCCGGGCCTCCAGGACCCCCCGGCAAGAGGGGACCCATTGGACCAGCCGGTACTGAGGGAAGACAAGGAGAGAAGGGATCTAAGGGTGAGGCTGGAGCCGAGGGGCCTGATGGTCAGACTGGACCTGTCGGACCCCAGGGGCCCTCTGGTAAACCCGGACCCGATGGCCTGCGTGGAATCCCCGGCCCTGTTGGTGAACAAGGACTTCCGGGTGCCTCTGGAATGGACGGACCCCCTGGACCTCTGGGACCCCCTGGTCTCGCTGGTCTGAAAGGAACTCCTGGGGGCAAAGGAGAAAAGgGTCACCCAGGTCTGATTGGTCTGATTGGGCCGCCTGGTGAGTtcggagagaagggagacagaggCCTGCCTGGACCCCAGGGAACTGGTGGAGGCAAAGGAGACACTGGTGTTGGTGGTCCTGCCGGTCCCCTTGGTCCTCCCGGACCCCCTGGTATTCCTGGACCTGTGGGCTCTAAGGGGTCCAAGGGATCGTCAGGTGGAGCTGGCCAGAAAGGAGACACTGGTGTGATTGGACCACCCGGAGCTCCTGGTCCTCCTGGTGACATCATCCAGCCGCTGCCCATCCAGCAGGCGAGCAGGAAGAACAGACGGCAGGCGGAGGACGACGGCGTGCAGGGCGACGAGGCGGGAGGCATGGCAGACTACGGCATGGAGACCACAGTGGACGTGGAGGACGTGTTCGGGTCCCTGAATAACTTGAAGCAGGACATCGAGAGGATGAAGTTCCCCATGGGAACCCAGGACAACCCTGCCAGGACCTGTAACGACCTGCACCTCAGCCAGCCTGACTTCCCTAACGGTGAATACTGGATCGATCCTAACCAGGGCTGTACTGGAGACTCCTTCAAGGTCTACTGTAACTTCACCGCTGGAGGAGAGACCTGTATCTACGCCGACAAGAAGTCCGCTGGCGTCAGAATATCTAACTGGCCAAAAGAGGCTCCAGGATCATGGTTCAGTGAATTCAAACGTGGAAAAATAttGAACTATGTGGACATGGAGGAGAACACCATCCAGACAGTCCAGATGACCTTCCTGAAGCTGCTCAGCTCATCAGCCCGTCAGAATTTCACCTACATCTGCCACCAGTCAGTAGCCTGGTACGATGCCAAGGCAGACGGCTACGACAAGGCTCTACGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTATGATAACAACCCCTTCATCAAGGCCCTGTCGGACGGATGCTCGctGAAGTCGGGCTACTCCAAGACGGTGATGGAGATCAACACTCCTCGCGTCGACCAAGTGCCCATCATCGACGTCATGTTTAATGACTTTGGCGACCCCAGCCAGCGGTTCGGGTTCGAGGTGGGCCCCGTCTGCTTCATGGGCTAGGACCTGACCATCCCCTGAACCCCTCTCTGCCCTACCCCCTACagaacaacacccccccccccccccctctgccctACCCCCTATAGAACAACatgcccccctcctcttccctaccCCCTATAGCACAACATGCCCCCCCTCTGCCCTGTCATAGAAGCATTGTCCCAGGGGAATACTCCTCGCCCTTGTAGGGCCAATCACATAATGACTTTAACTTGTAACGAGAGGAAGTGACATCAGGAATAAAGGACGTTTGATGCCGTGGGCGGACAGTGGCACACTTTCAGCAAACAGAGAGGAGGACCCACTCGCCCCAACCCTCAAaacctccttttctctccctcgtctcccctctcctcaccctttaCCTTGATTAGAGGGAGGATCCACTCACCCCACCCAAGCCCCCTTTCCACCCCTCATCTCACCCCTCGTCCTTACCCCTTTTCCCTCCAACCACTCTTCCTACCCTGTCTCGTCCCTCCCCCAGCCCAGTCTCCCTGTCTGGTAGCTCCAGTCTCCTCGCCCCTCCTCCAGCCCAGCCTCCCTGTCTGGTAGCTCCAGTCCCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCCCATCCTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCATCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGTTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGTTCCAGTCTCCTCGTCCCTCCGCCAGCCCAGCCTCCCTGTCTGATAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGTTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCCCTGCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAACCCAGCCTCCCTGTCTGGTAGTTCCAGTCTCCTCGTCCCTCCGCCAGCCCAGCCTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGTTCCAGTCTCCTCGTCcctcccccagcccagcctcccTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCCCTCCCCCAGCTTCCCTGTCTGGTAGCTCCAGTCTCCTCGTCcctcccccagcccagcctccGTGGCTCCAGTGTTGCTCCAGATACAACCACAGAGGTGCTTTTGTGCGGAACACAGAACACCAGAGGTGCTACAAAAAAAAAGTgaattttgcaaaaaaaaactgtaattattattatttttattttgtacaatACTGTTCTCTTTCTGAATCCACTCTTCAAAAAAAAGAAACTTGCATGTGTACCAAAGCTCTTACTATTAATGTTTTAATAAATGTTGGTTTTAAACTATATAGAAAATAAATTTGCAATAAAGATATTTGTTTGTGTTAAATATCTGTTGAGAAACGAATGGGTAAGTAATACTAGGTTGTTGTGTTTGGGATACAGTGTAATATCAGCAATACAAATAATTATGAAGAATCTCCTTTGTAAATATTGACCATTATAAAGCACTTACAACATTATTCTCCCCTTCCAAGACTATAATCTACAGTAAAACATGATGTACATAGTAGGCCTATATACAGTAAAGGGTTATGTACATAGTAGGCCTATATACAGTAAGGGTTACTAAACCCTAAACTGGACTACAACCACCTTAAACCATTTTGTCTTATAACTAACTGACTTGTGTTATTGTTTTCAACTATTACTTCCTGGTTTTGATTATTTGTGCCCACTAAATCAGGAATGTAAGATTGCAGAGTAATTTAAAAATGAGTAATGTGAAAATGTCCACAAAGCCAGTTTACATATTGCACTCGACAAGCTTCTTATGCCAGATAGATTTTTATCCCACAGAATGGTATACCTCAATCGCTCTATGTACATTAATGTTGAGATGCTATAGGATCGATAAGAAACCCTGTATATACCTTGATTTGTACAATTGAGTTAATATATTTGGGCTGGTggaattcttttttttaaagcaaaagAAAAATAACTTCTCGTCTATTTCCTAACAGTTTTGTGAATGATGCCAAATAAATTAGACCGTTTCTGTTACAGTAATGAGGAAGTGTTTTCATGTGCTTTTGATGGTTGATTCATATTAAAACTGGATTCTGAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860931 lncRNA upstream 20751 86331323 ~ 86331523 (+) True G757844
TU860929 lncRNA upstream 22212 86329802 ~ 86330062 (+) True G757842
TU860928 lncRNA upstream 23419 86328639 ~ 86328855 (+) True G757841
TU860828 lncRNA upstream 127587 86224283 ~ 86224687 (+) True G757753
TU860827 lncRNA upstream 128737 86223212 ~ 86223537 (+) True G757752
TU861135 lncRNA downstream 21654 86577460 ~ 86577961 (+) True G758022
TU861137 lncRNA downstream 24883 86580689 ~ 86580920 (+) True G758024
TU861126 lncRNA downstream 28911 86584717 ~ 86585095 (+) True G758013
TU861152 lncRNA downstream 30662 86586468 ~ 86586742 (+) True G758037
TU861156 lncRNA downstream 44630 86600436 ~ 86631776 (+) True G758040
XM_036986618.1 mRNA upstream 471057 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 591316 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 639068 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 643504 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 689217 85658600 ~ 85663057 (+) True LOC110530829
XM_036986626.1 mRNA downstream 13894 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 35704 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 356371 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 447373 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 977144 87532950 ~ 87549838 (+) True LOC110519501
TU860829 other upstream 120815 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 234326 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 324000 85951968 ~ 86028274 (+) True G757472
TU859221 other upstream 1088181 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 1414530 84936066 ~ 84937744 (+) False G756298
TU861161 other downstream 78978 86634784 ~ 86635460 (+) True G758045
TU861389 other downstream 356370 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 356370 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 356370 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 377640 86933446 ~ 86934011 (+) True G758259

Expression Profile